New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 842190	64 (1.010)	3 (0.050)	3/264	10.3	5.0%	coding (2423/2847 nt)	uvrA	excision endonuclease subunit UvrA
	?	CP000730	= 842276	54 (0.890)					coding (2509/2847 nt)	uvrA	excision endonuclease subunit UvrA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATATTAGTAGATTATTAAAAGTATTAAACCGATTAGTTGAAAATGGTGATACTGTT  >  CP000730/842138‑842416                                                                                                                                           |                                                                                                                                             gTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGaaa                                                                                                                                            >  2:566426/1‑141 (MQ=255)   tGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACt                                                                                                                                          <  2:174351/141‑1 (MQ=255)    gaagaaGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACtt                                                                                                                                         <  2:507400/141‑1 (MQ=255)        aagCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCAt                                                                                                                                     >  1:136360/1‑141 (MQ=255)         agCAACACAATTTTTTGATAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATc                                                                                                                                    >  1:302283/1‑141 (MQ=255)         agCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGCTACGTAACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATc                                                                                                                                    <  1:610453/141‑1 (MQ=255)          gCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCt                                                                                                                                   <  1:444316/141‑1 (MQ=255)            aaCACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGa                                                                                                                                 >  2:369732/1‑141 (MQ=255)             acacAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTAGATGATGGTCTTGGATACGTCATATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGACTAAAAGTGTGAAACTTGCATCTaaa                                                                                                                                >  2:340526/1‑141 (MQ=255)                     ttttGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATaa                                                                                                                        >  2:211186/1‑141 (MQ=255)                         gAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGt                                                                                                                    <  2:597113/141‑1 (MQ=255)                           aaaTATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTc                                                                                                                  >  2:44252/1‑141 (MQ=255)                             atatTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCaa                                                                                                                <  2:199123/141‑1 (MQ=255)                              tttttcTAAGATAAAACGCCATTTACAAATTCTAGTTGATGCTGGTCTTGGATACGTCACATTACCTCAACTTGTTTTTATTTTTTCATGTGGTGAGACTCAACGTGTGAAACTTGCATCTTTACTTCATAAACGTTCAAc                                                                                                               >  2:604943/6‑141 (MQ=255)                                 tCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGCTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTgg                                                                                                            <  2:539939/141‑1 (MQ=255)                                           aaGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTAtt                                                                                                  <  1:669786/141‑1 (MQ=255)                                             gcgcAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTta                                                                                                >  1:547888/1‑141 (MQ=255)                                             gcgcAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTta                                                                                                <  1:572261/141‑1 (MQ=255)                                              cgcAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAATCGTTCAACTGGTAAGTCTATTtat                                                                                               <  2:69273/141‑1 (MQ=255)                                              cgcAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTtat                                                                                               >  2:390374/1‑141 (MQ=255)                                              cgcAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTtat                                                                                               >  1:297261/1‑141 (MQ=255)                                                      aCAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGa                                                                                       >  2:581343/1‑141 (MQ=255)                                                        aaaCACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATg                                                                                     >  2:311262/1‑141 (MQ=255)                                                        aaaCACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATg                                                                                     >  2:227614/1‑141 (MQ=255)                                                         aaCACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGa                                                                                    >  1:584039/1‑141 (MQ=255)                                                         aaCACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGa                                                                                    >  1:93568/1‑141 (MQ=255)                                                          acacTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAATCGACAACGTGATCATGTGGTGAGGCTCAACGTTTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGaa                                                                                   <  1:99985/141‑1 (MQ=255)                                                          acacTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGaa                                                                                   >  2:393491/1‑141 (MQ=255)                                                            ttgtcattttattGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAAcc                                                                                 <  2:487255/130‑1 (MQ=255)                                                               aggtGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGACACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTCTTTATATCCTAGATGAACCGac                                                                              >  2:150433/4‑141 (MQ=255)                                                                 ttGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTCGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGacaa                                                                            <  2:165483/141‑1 (MQ=255)                                                                    aTGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAg                                                                         <  1:595309/141‑1 (MQ=255)                                                                     tGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAgg                                                                        <  2:85984/141‑1 (MQ=255)                                                                      gTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAggg                                                                       <  2:292483/141‑1 (MQ=255)                                                                        tGGTCTTGGATACGTCACAGTAGTTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATCTCCTAGATGAACCGACAACAGGGtt                                                                     <  1:39959/141‑1 (MQ=255)                                                                         ggTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAGTCTATTTATATCCTAGATGACCCGACAACAGGGTTa                                                                    >  1:509705/1‑141 (MQ=255)                                                                           tCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACa                                                                  <  2:453123/141‑1 (MQ=255)                                                                                gATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTg                                                             <  2:342392/141‑1 (MQ=255)                                                                                gATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTg                                                             <  1:201625/141‑1 (MQ=255)                                                                                        acaTTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATAtt                                                     <  2:49217/141‑1 (MQ=255)                                                                                           ttAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATATtagt                                                  >  2:198776/1‑141 (MQ=255)                                                                                            tAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATATtagta                                                 <  1:220221/141‑1 (MQ=255)                                                                                            tAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATATtagta                                                 <  1:558960/141‑1 (MQ=255)                                                                                              ggTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATATTAGTAGa                                               <  1:254637/141‑1 (MQ=255)                                                                                              ggTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATATTAGTAGa                                               >  2:68962/1‑141 (MQ=255)                                                                                                  aacaaGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATATTAGTAGattat                                           <  1:284793/141‑1 (MQ=255)                                                                                                   acaaGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATATTAGTAGattatt                                          >  1:101491/1‑141 (MQ=255)                                                                                                             aCGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGGCAACAGGGTTACATGTTGACGATATTAGTAGATTATTAAAAGTATTa                                >  1:424769/1‑141 (MQ=255)                                                                                                                  aTCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATATTAGTAGATTATTAAAAGTATTAAACCg                           >  2:458284/1‑141 (MQ=255)                                                                                                                   tCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATATTAGTAGATTATTAAAAGTATTAAACCGa                          <  1:458284/141‑1 (MQ=255)                                                                                                                             aGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATATTAGTAGATTATTAAAAGTATTAAACCGATTAGTTGaaa                <  1:5426/141‑1 (MQ=255)                                                                                                                               gCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTCAATGAACCGACAACAGGGTTACAGGTTGAAGATATTAGTAGATTATTAAAAGTATTAAACCGATTAGTTGAAAAt              <  1:173267/141‑1 (MQ=255)                                                                                                                                  cAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATATTAGTAGATTATTAAAAGTATTAAACCGATTAGTTGAAAATGGt           <  2:93568/141‑1 (MQ=255)                                                                                                                                  cAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATATTAGTAGATTATTAAAAGTATTAAACCGATTAGTTGAAAATGGt           >  1:252221/1‑141 (MQ=255)                                                                                                                                        gtgAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATATTAGTAGATTATTAAAAGTATTAAACCGATTAGTTGAAAATGGTGATACt     >  1:405519/1‑141 (MQ=255)                                                                                                                                           aaaCTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATTCTAGTTGAACCGACAACAGGGTTACATGTTGACGATATTAGTAGATTATTAAAAGTATTAAACCGATTAGTTGAAAATGGTGATACtgtt  <  2:491357/141‑1 (MQ=255)                                                                                                                                           aaaCTTGCATCTGAACCTCAGAAGCGTTCAACGGGTAAATCGATTTACATCCTTGATGAACCGATAACAGGGTTAGAGGTTGACGATATGAGTAGATTATTAAAAGTATTAAACCGATTCGTTGAAAATGGGGATACtgtt  <  2:672475/141‑1 (MQ=255)                                                                                                                                           |                                                                                                                                             GTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTATATCCTAGATGAACCGACAACAGGGTTACATGTTGACGATATTAGTAGATTATTAAAAGTATTAAACCGATTAGTTGAAAATGGTGATACTGTT  >  CP000730/842138‑842416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.