New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP000730 | = 842190 | 64 (1.010) | 3 (0.050) | 3/264 | 10.3 | 5.0% | coding (2423/2847 nt) | uvrA | excision endonuclease subunit UvrA |
? | CP000730 | = 842276 | 54 (0.890) | coding (2509/2847 nt) | uvrA | excision endonuclease subunit UvrA | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
TGAAGTGTGTGATGGTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTAT > CP000730/842050‑842323 | tgAAGTGTGTGATGGTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGtt > 1:165483/1‑141 (MQ=255) gAAGTGTGTGATGGTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTa < 2:89314/141‑1 (MQ=255) gAAGTGTGTGATGGTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTa > 1:179644/1‑141 (MQ=255) aaGTGTGTGATGGTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTAc > 1:32757/1‑141 (MQ=255) tgATGGTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGTTTATTTTCAGAAGATTAAGCGCATGAGACAAactgt > 2:201123/1‑138 (MQ=255) tgATGGTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACt > 1:49217/1‑141 (MQ=255) tgATAGTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGATATTTTAGAAATGACTGTTTAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACt < 1:492011/141‑1 (MQ=255) gATGGTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTa > 1:277314/1‑141 (MQ=255) gTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTg < 1:641460/141‑1 (MQ=255) aaaCGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTGCTAAGATTAAGCGCAGGTTACAAACACTAGTTGAt < 1:593719/141‑1 (MQ=255) aaCGATATAATCGTGAGACACTAGTGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATg < 1:528545/141‑1 (MQ=255) aaCGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATg < 1:339627/141‑1 (MQ=255) aaCGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATg < 2:479783/141‑1 (MQ=255) aCGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGt < 1:344362/141‑1 (MQ=255) cGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGtt < 2:456725/141‑1 (MQ=255) gATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTg > 1:320860/1‑141 (MQ=255) atatAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTgg < 2:189013/141‑1 (MQ=255) tataATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGt < 1:542406/141‑1 (MQ=255) aaTCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTggataa > 1:3168/1‑137 (MQ=255) aTCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTg < 1:22483/141‑1 (MQ=255) aTCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTg < 2:397588/141‑1 (MQ=255) tGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATa < 1:110303/141‑1 (MQ=255) acacTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTc < 2:622746/141‑1 (MQ=255) tAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACAt > 2:254637/1‑141 (MQ=255) gagGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTa < 2:390790/141‑1 (MQ=255) gtttacttacTAACGTGTTAATATGGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTTCGAAGATTATGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATGAgt < 2:441774/139‑2 (MQ=255) gttagttaCAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGt < 2:237343/141‑1 (MQ=255) gTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGt > 1:593857/1‑141 (MQ=255) cttacAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTcaac < 2:212819/141‑1 (MQ=255) aaaGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAATCGCAAGTTACAAACACTAGTTGATGGTGGTCTTGGATACGTCACATGAGGTCAACAAGCt > 2:342250/1‑141 (MQ=255) aaaGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCt > 1:292483/1‑141 (MQ=255) aaaaaTATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACg > 1:556072/1‑141 (MQ=255) aaaaaTATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACg < 2:51975/141‑1 (MQ=255) aaaaaTATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTGGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACg > 1:504044/1‑141 (MQ=255) aaaTATTGCTGACATTTTAGAAGTGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGtt < 2:291838/141‑1 (MQ=255) atatTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTAt > 1:593025/1‑141 (MQ=255) tGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAgg > 2:201625/1‑141 (MQ=255) gCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAggt > 1:397561/1‑141 (MQ=255) gCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAggt > 2:419710/1‑141 (MQ=255) gCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAggt > 2:427252/1‑141 (MQ=255) cTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGTAAATTTTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAggtg > 2:528678/1‑141 (MQ=255) aTTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAg < 2:88561/141‑1 (MQ=255) tttAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGc < 2:179644/141‑1 (MQ=255) aGAAATGACTGTTGAAGAAGCAACACAATTTTTTTAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCa > 2:543665/1‑141 (MQ=255) gTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGaaa > 2:566426/1‑141 (MQ=255) tGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACt < 2:174351/141‑1 (MQ=255) gaagaaGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACtt < 2:507400/141‑1 (MQ=255) aagCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCAt > 1:136360/1‑141 (MQ=255) agCAACACAATTTTTTGATAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATc > 1:302283/1‑141 (MQ=255) agCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGCTACGTAACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATc < 1:610453/141‑1 (MQ=255) gCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCt < 1:444316/141‑1 (MQ=255) aaCACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGa > 2:369732/1‑141 (MQ=255) acacAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTAGATGATGGTCTTGGATACGTCATATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGACTAAAAGTGTGAAACTTGCATCTaaa > 2:340526/1‑141 (MQ=255) ttttGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATaa > 2:211186/1‑141 (MQ=255) gAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGt < 2:597113/141‑1 (MQ=255) aaaTATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTc > 2:44252/1‑141 (MQ=255) atatTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCaa < 2:199123/141‑1 (MQ=255) tttttcTAAGATAAAACGCCATTTACAAATTCTAGTTGATGCTGGTCTTGGATACGTCACATTACCTCAACTTGTTTTTATTTTTTCATGTGGTGAGACTCAACGTGTGAAACTTGCATCTTTACTTCATAAACGTTCAAc > 2:604943/6‑141 (MQ=255) tCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGCTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTgg < 2:539939/141‑1 (MQ=255) aaGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTAtt < 1:669786/141‑1 (MQ=255) gcgcAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTta > 1:547888/1‑141 (MQ=255) gcgcAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTta < 1:572261/141‑1 (MQ=255) cgcAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAATCGTTCAACTGGTAAGTCTATTtat < 2:69273/141‑1 (MQ=255) cgcAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTtat > 1:297261/1‑141 (MQ=255) cgcAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTtat > 2:390374/1‑141 (MQ=255) | TGAAGTGTGTGATGGTAAACGATATAATCGTGAGACACTAGAGGTTACTTACAAAGGTAAAAATATTGCTGACATTTTAGAAATGACTGTTGAAGAAGCAACACAATTTTTTGAAAATATTCCTAAGATTAAGCGCAAGTTACAAACACTAGTTGATGTTGGTCTTGGATACGTCACATTAGGTCAACAAGCTACAACGTTATCAGGTGGTGAGGCTCAACGTGTGAAACTTGCATCTGAACTTCATAAACGTTCAACTGGTAAATCTATTTAT > CP000730/842050‑842323 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |