| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2406948 = | 62 (0.970) | 3 (0.050) | 3/264 | 10.3 | 4.8% | coding (613/1716 nt) | ureC | urease alpha subunit |
| ? | CP000730 | 2406995 = | 61 (1.010) | coding (660/1716 nt) | ureC | urease alpha subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGTATCTGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2407094‑2406948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggattAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGCTGCT > CP000730/2406995‑2407133 AGTATCTGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGT > 1:327330/1‑141AGTATCTGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGT < 2:413687/141‑1 ATCTGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGG > 1:339262/1‑141 TAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGC > 1:74430/1‑141 ATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAG > 1:336860/1‑141 ATTTGTTCAATGAGTGCAGTTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGA < 2:336860/141‑1 gcaaagggggTAAAAGGACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGACGGGTTTATGGAAGACACA < 1:55882/131‑1 TTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGG < 1:408245/141‑1 GGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGCT < 1:88057/141‑1 TTAAAAGTACATGAAGACTAGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGCTGCT < 2:580812/141‑1 AGTATCTGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2407094‑2406948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggattAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGCTGCT > CP000730/2406995‑2407133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |