| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2406948 = | 62 (0.970) | 3 (0.050) | 3/264 | 10.3 | 4.8% | coding (613/1716 nt) | ureC | urease alpha subunit |
| ? | CP000730 | 2406995 = | 61 (1.010) | coding (660/1716 nt) | ureC | urease alpha subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTGGTGGTGGTACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATG > CP000730/2406810‑2407086 | atTGGTGGTGGTACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAAt > 1:123638/1‑141 (MQ=255) gtggtggtACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCaa < 2:417540/141‑1 (MQ=255) ggtggtACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACt < 1:50703/141‑1 (MQ=255) gtggtACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTg < 2:630623/141‑1 (MQ=255) gtggtACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGACGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTg > 2:138167/1‑141 (MQ=255) gTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTg < 1:27010/141‑1 (MQ=255) tCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACaa < 2:83498/141‑1 (MQ=255) tCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACaa > 2:88057/1‑141 (MQ=255) cAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACaaa < 2:31003/141‑1 (MQ=255) gAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATc < 1:359791/141‑1 (MQ=255) aaGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCa > 2:643465/1‑141 (MQ=255) tCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGcc < 1:286188/141‑1 (MQ=255) tCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGcc > 2:359447/1‑141 (MQ=255) tCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGcc < 1:9523/141‑1 (MQ=255) cTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCg > 1:45972/1‑141 (MQ=255) aaaGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGa < 1:643465/141‑1 (MQ=255) aaaGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGa > 1:669017/1‑141 (MQ=255) aaGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAg < 1:675612/141‑1 (MQ=255) acaacTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAAtt < 1:144321/141‑1 (MQ=255) cTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGAt < 1:96925/141‑1 (MQ=255) cTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGAt < 1:96796/141‑1 (MQ=255) cTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGAt < 2:205125/141‑1 (MQ=255) accTCCAGGTCCATGGCATATTCATAGACTGTTAGAAGCTGCCGAAGGCTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCAATCATTGAACAAATCAATGCCGGAGCAATTAGATTaga < 2:610456/139‑3 (MQ=255) ccAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTa < 2:208235/141‑1 (MQ=255) gTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATg < 2:641483/141‑1 (MQ=255) ccATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGaa < 2:386070/141‑1 (MQ=255) aTGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGa < 2:232028/141‑1 (MQ=255) aTGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGa > 1:494324/1‑141 (MQ=255) tatTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTgggg < 1:557255/141‑1 (MQ=255) tAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATCGGATTACAAGTACATGAAGACTGTGGTGCAac > 2:594866/1‑141 (MQ=255) aaTGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACAcc < 1:15549/141‑1 (MQ=255) tGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCTTTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCAt < 1:522496/141‑1 (MQ=255) tGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGTCTGGGGTGCAACACCAt < 2:220501/141‑1 (MQ=255) tGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAAGTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCAt > 1:444215/1‑141 (MQ=255) gTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATc < 1:101186/141‑1 (MQ=255) gTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATc < 2:568540/141‑1 (MQ=255) ttAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACGATCt > 1:408342/1‑141 (MQ=255) aGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAACTCCAACTGCACTCATTGAACAAAGCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGc < 1:28239/141‑1 (MQ=255) aGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGc > 2:57172/1‑141 (MQ=255) aGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCttt > 2:657634/1‑141 (MQ=255) gCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTg > 1:128943/1‑141 (MQ=255) cGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATCGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCa > 2:277608/1‑141 (MQ=255) gAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCAt < 2:332227/141‑1 (MQ=255) gAAGGTTTACCGATTAATGTCGGCTTTAAAGGTAAAGGACAAGCAACAATTCCATCTGCACTCATTGAACAAATAAATGCCGGAGCAATTGGATTAAAAGTTCATGAAGACTGGAATGCAACACCACCTGCTTTGAGtaac < 2:342679/141‑4 (MQ=255) gTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCAt < 1:437099/141‑1 (MQ=255) ccGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGAt > 1:546264/1‑141 (MQ=255) cGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATg < 1:497009/141‑1 (MQ=255) gATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGt < 2:669017/141‑1 (MQ=255) aaTGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCt > 2:365979/1‑141 (MQ=255) tGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCtga < 2:464374/141‑1 (MQ=255) tCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTTGATTAAAATGGCAGGAATACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCtgatg > 1:576153/1‑141 (MQ=255) gTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGGCTGACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAAt < 1:665772/141‑1 (MQ=255) gTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAAt > 1:360984/1‑141 (MQ=255) tttACAGGTAAAGGACAAGAAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCCATTGGATTAAACGTCCATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAAttt < 1:170745/141‑1 (MQ=255) gTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTc > 1:33616/1‑141 (MQ=255) aaGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCaaa < 1:530677/141‑1 (MQ=255) ggACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAAtt < 1:667985/141‑1 (MQ=255) aCAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGc > 1:207757/1‑141 (MQ=255) aCAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGc < 1:403296/141‑1 (MQ=255) aacaaATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACa > 2:347710/1‑141 (MQ=255) caaATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATg > 2:225606/1‑141 (MQ=255) caaATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATg > 1:466137/1‑141 (MQ=255) | ATTGGTGGTGGTACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATG > CP000730/2406810‑2407086 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |