New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2681054	68 (1.070)	3 (0.050)	3/268	10.4	4.2%	intergenic (‑89/+490)	USA300HOU_2538/mvaA	hypothetical protein/hydroxymethylglutaryl‑CoA reductase
	?	CP000730	= 2681066	70 (1.140)					intergenic (‑101/+478)	USA300HOU_2538/mvaA	hypothetical protein/hydroxymethylglutaryl‑CoA reductase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCTCTTAAATACATATAAATCTCTATTATAATCTCCATAAATGTCATATCTCCTCTCTCAAAAAACATTATACTCAATATATTAAAAATAAGAAAGGTTTTTTCAGAATTTTTAGTATTTTCAGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2680927‑2681054 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agataCTTAAGAATAAATATCTGAAAATACTAAAAATTCTGAAAAAACCTTTCTTATTTTTAATATATTGAGTATAATGTTTTTTGAGAGAGGAGATATGACATTTATGGAGATTATAATAGAGATTTATATGTATTTAAGAGAT  <  CP000730/2681066‑2680927                                                                                                                                                                                                                                                                              ATCACTTAAATACATATAAACATCTATTATAATCTCCAGAAATGTCATATATCCTCTCTCAAAAAACATTATACTCAATATATTAAAAATAAGAAAGGTTTTTTCAGAATTTTTAGTATTTTCAGATACTTAAGAATAAAT                                                                                                                                 <  2:589143/141‑1                                      ATAAATGTCATATCTCCTCTCTCAAAAAACATTATACTCAATATATTAAAAATAAGAAAGGTTTTTTCAGAATTTTTAGTATTTTCAGATACTTAAGAATAAATATCTGAAAATACTAAAAATTCTGAAAAAACCTTTCTT                                                                                            >  1:164456/1‑141                                                                                     AAAAATAAGAAAGGTTTTTTCAGAATTTTTAGTATTTTCAGATACTTAAGAATAAATATCTGAAAATACTAAAAATTCTGAAAAAACCTTTCTTATTTTTAATATATTGAGTATAATGTTTTTTGAGAGAGGAGATATGAC                                             <  2:164456/141‑1                                                                                                                                ACTTAAGAATAAATATCTGAAAATACTAAAAATTCTGAAAAAACCTTTCTTATTTTTAATATATTGAGTATAATGTTTTTTGAGAGAGGAGATATGACATTTATGGAGATTATAATAGAGATTTATATGTATTTAAGAGAT  <  2:274932/141‑1                                                                                                                                                                                                                                                                              ATCTCTTAAATACATATAAATCTCTATTATAATCTCCATAAATGTCATATCTCCTCTCTCAAAAAACATTATACTCAATATATTAAAAATAAGAAAGGTTTTTTCAGAATTTTTAGTATTTTCAGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2680927‑2681054 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agataCTTAAGAATAAATATCTGAAAATACTAAAAATTCTGAAAAAACCTTTCTTATTTTTAATATATTGAGTATAATGTTTTTTGAGAGAGGAGATATGACATTTATGGAGATTATAATAGAGATTTATATGTATTTAAGAGAT  <  CP000730/2681066‑2680927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.