New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	174622 =	31 (1.140)	3 (0.120)	3/258	4.0	10.8%	coding (568/669 nt)	cap5A	capsular polysaccharide biosynthesis protein Cap5A
	?	CP000730	174670 =	21 (0.830)					coding (616/669 nt)	cap5A	capsular polysaccharide biosynthesis protein Cap5A
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAGTGTTGTTGTCGTATTTTCCTTTTTTGACATAAGTAGCAACCATCCTTAATTAAATTTTTGAATTGAACCCAATACAGGCAATCCTAATTCTTTCTCTACATCTTCTTCATCTTTAATTCGCTTATCGAAAATTACTTTGAAGAAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/174771‑174622 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaagaagatGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGACAACAACACTAT  >  CP000730/174670‑174772                                                                                                                                                                                                                                                               TAGTGTTGTTGTCGTATTTTCCTTTTTTGACATAAGTAGCAACCATCCTTAATTAAATTTTTGAATTGAACCCAATACAGGCAATCCTAATTCTTTCTCTACATCTTCTTCATCTTTAATTCGCTTATCGAAAATTACTTT                                                                                                                  <  2:11658/141‑1                                                                                                        TCTTCTTCATCTTTAATTCGCTTATCGAAAATTACTTTGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGACAA           >  2:160136/1‑141                                                                                                             TTCATCTTTAATTCGCTTATCGAAAATTACTTTGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGACAACAACA      >  2:42962/1‑141                                                                                                                 TCTTTAATTCGCTTATCGAAAATTACTTTGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGACAACAACACTAT  >  2:170624/1‑141                                                                                                                                                                                                                                                               TAGTGTTGTTGTCGTATTTTCCTTTTTTGACATAAGTAGCAACCATCCTTAATTAAATTTTTGAATTGAACCCAATACAGGCAATCCTAATTCTTTCTCTACATCTTCTTCATCTTTAATTCGCTTATCGAAAATTACTTTGAAGAAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/174771‑174622 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaagaagatGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGACAACAACACTAT  >  CP000730/174670‑174772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.