New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	174622 =	31 (1.140)	3 (0.120)	3/258	4.0	10.8%	coding (568/669 nt)	cap5A	capsular polysaccharide biosynthesis protein Cap5A
	?	CP000730	174670 =	21 (0.830)					coding (616/669 nt)	cap5A	capsular polysaccharide biosynthesis protein Cap5A
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGACAACAACACTATTTGTATATGAAAAACCAAAA  >  CP000730/174536‑174792                                                                                                                                       |                                                                                                                           aCGCTACAGCAGTTAAAATCGAAACAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCATCATCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAgaga                                                                                                                      <  2:58172/141‑1 (MQ=255)    gTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGagaaag                                                                                                                   <  2:159191/141‑1 (MQ=255)           agTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTGTTTAGGATTAGTTGTCGCGCGTATATATATCTTCTGCAAAGTAATGTTAGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGATTTAgg                                                                                                            <  2:23355/141‑1 (MQ=255)                                       aaTCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCaaaaa                                                                                >  2:166985/1‑141 (MQ=255)                                            aaTCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATttaa                                                                           <  1:189309/141‑1 (MQ=255)                                             aTCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAACTCAAAAATttaat                                                                          >  2:244689/1‑141 (MQ=255)                                                   gCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGa                                                                    <  1:253238/141‑1 (MQ=255)                                                     aTTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTATAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATg                                                                  >  2:1181/1‑141 (MQ=255)                                                          ttttAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGc                                                             <  1:248660/141‑1 (MQ=255)                                                                       tGTCGCGCTTATATAAATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTAAATTAAAAAATTTAATTAAGGATGGTTGCTACTTATGTCaaa                                                <  2:99289/141‑1 (MQ=255)                                                                           gcgcTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAg                                            >  1:55108/1‑141 (MQ=255)                                                                           gcgcTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAg                                            >  1:55048/1‑141 (MQ=255)                                                                             gcTTATATATATCTTCTTCAAAGTAATTTTCGATAAGTGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGa                                          >  2:30698/1‑141 (MQ=255)                                                                                    tatatCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACg                                   <  2:151650/141‑1 (MQ=255)                                                                                     atatCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGa                                  <  1:264332/141‑1 (MQ=255)                                                                                                aaaGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGACAACAACACTa                       >  2:11658/1‑141 (MQ=255)                                                                                                      aTTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTGAATTAAAAAATTTAATTAAGGATGGTTGTTACTTATGTCAAAAAAGGAAAAAACGACAACAACACTATTTGta                 >  1:170069/1‑141 (MQ=255)                                                                                                      aTTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGACAACAACACTATTTGta                 <  1:30108/141‑1 (MQ=255)                                                                                                        tttCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGACAACAACACTATTTGtata               >  1:18145/1‑141 (MQ=255)                                                                                                              tAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGACAACAACACTATTTGTATATGaaaa         <  1:185951/141‑1 (MQ=255)                                                                                                                     aTTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGACAACAACACTATTTGTATATGAAAAACCaaaa  >  1:101210/1‑141 (MQ=255)                                                                                                                                       |                                                                                                                           ACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGACAACAACACTATTTGTATATGAAAAACCAAAA  >  CP000730/174536‑174792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.