New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	174622 =	31 (1.140)	3 (0.120)	3/258	4.0	10.8%	coding (568/669 nt)	cap5A	capsular polysaccharide biosynthesis protein Cap5A
	?	CP000730	174670 =	21 (0.830)					coding (616/669 nt)	cap5A	capsular polysaccharide biosynthesis protein Cap5A
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAAATTCCGAAGATTATGAGTGTGGATAACGTATCAATTTTATCTAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGA  >  CP000730/174484‑174760                                                                                                                                           |                                                                                                                                           cAAATTCCGAAGATTATGAGTGTGGATAACGTATCAATTTTATCTAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATAtc                                                                                                                                          <  2:143976/141‑1 (MQ=255) cAAATTCCGAAGATTATGAGTGTGGATAACGTATCAATTTTATCTAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATAtc                                                                                                                                          <  1:21471/141‑1 (MQ=255)  aaaTTCCGAAGATTATGAGTGTGGATAACGTATCAATTTTATCTAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATAtct                                                                                                                                         >  1:157894/1‑141 (MQ=255)         gAAGATTATGAGTGTGGATAACGTATCAATTTTATCTAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCaa                                                                                                                                  <  2:124205/141‑1 (MQ=255)            gATTATGAGTGTGGATAACGTATCAATTTTATCTAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGt                                                                                                                               <  2:97775/141‑1 (MQ=255)                aTGAGTGTGGATAACGTATCAATTTTATCTAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAAtt                                                                                                                           >  2:248660/1‑141 (MQ=255)                  gAGTGTGGATAACGTATCAATTTTATCTAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAAtttt                                                                                                                         >  1:135970/1‑141 (MQ=255)                  gAGTGTGGATAACGTATCAATTTTATCTAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAAtttt                                                                                                                         >  2:287800/1‑141 (MQ=255)                          aTAACGTATCAATTTTATATAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACGGGAGTGAATCTAATCGGTGCATTCTTTTTATGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGc                                                                                                                 >  2:170497/1‑141 (MQ=255)                                  tCAATTATACCTAAAGCAGACGGTACATCAGTTAATGTCGCACCAAAAACTTAAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCTCGCTTATATATATCTTCTTCAAAGTAATTTTGGATAAGCGAATTaaa                                                                                                         >  2:148588/1‑141 (MQ=255)                                     aTTTTATCTAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGAt                                                                                                      >  1:205913/1‑141 (MQ=255)                                       tttATCTAAATCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCTATAAGCGAATTAAAGATga                                                                                                    <  2:56397/141‑1 (MQ=255)                                       tttATCTAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATga                                                                                                    <  1:239938/141‑1 (MQ=255)                                         tATCTAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATgaag                                                                                                  >  1:61061/1‑141 (MQ=255)                                           tCTAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATgaagaa                                                                                                >  2:143443/1‑141 (MQ=255)                                            cTAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGaagaag                                                                                               >  2:30108/1‑141 (MQ=255)                                                     aCGCTACAGCAGTTAAAATCGAAACAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCATCATCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAgaga                                                                                      <  2:58172/141‑1 (MQ=255)                                                        gTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGagaaag                                                                                   <  2:159191/141‑1 (MQ=255)                                                               agTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTGTTTAGGATTAGTTGTCGCGCGTATATATATCTTCTGCAAAGTAATGTTAGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGATTTAgg                                                                            <  2:23355/141‑1 (MQ=255)                                                                                           aaTCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCaaaaa                                                >  2:166985/1‑141 (MQ=255)                                                                                                aaTCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATttaa                                           <  1:189309/141‑1 (MQ=255)                                                                                                 aTCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAACTCAAAAATttaat                                          >  2:244689/1‑141 (MQ=255)                                                                                                       gCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGa                                    <  1:253238/141‑1 (MQ=255)                                                                                                         aTTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTATAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATg                                  >  2:1181/1‑141 (MQ=255)                                                                                                              ttttAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGc                             <  1:248660/141‑1 (MQ=255)                                                                                                                           tGTCGCGCTTATATAAATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTAAATTAAAAAATTTAATTAAGGATGGTTGCTACTTATGTCaaa                <  2:99289/141‑1 (MQ=255)                                                                                                                               gcgcTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAg            >  1:55108/1‑141 (MQ=255)                                                                                                                               gcgcTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAg            >  1:55048/1‑141 (MQ=255)                                                                                                                                 gcTTATATATATCTTCTTCAAAGTAATTTTCGATAAGTGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGa          >  2:30698/1‑141 (MQ=255)                                                                                                                                        tatatCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACg   <  2:151650/141‑1 (MQ=255)                                                                                                                                         atatCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGa  <  1:264332/141‑1 (MQ=255)                                                                                                                                           |                                                                                                                                           CAAATTCCGAAGATTATGAGTGTGGATAACGTATCAATTTTATCTAAAGCAGACGGTACAGCAGTTAAAGTCGCACCAAAAACTGTAGTGAATCTAATCGGTGCATTCTTTTTAGGATTAGTTGTCGCGCTTATATATATCTTCTTCAAAGTAATTTTCGATAAGCGAATTAAAGATGAAGAAGATGTAGAGAAAGAATTAGGATTGCCTGTATTGGGTTCAATTCAAAAATTTAATTAAGGATGGTTGCTACTTATGTCAAAAAAGGAAAATACGA  >  CP000730/174484‑174760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.