New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 691779 =101 (1.130)3 (0.040) 3/248 15.1 3.2% coding (43/1056 nt) USA300HOU_0634 hypothetical protein
?CP000730 691838 = 91 (1.130)intergenic (‑17/+44) USA300HOU_0634/USA300HOU_0635 hypothetical protein/possible replication initiation protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGAGGCTTTAAAACAAAAAAAGCACTTATCAAAAGATAAGTGTTAAAAAAATAACTGGGATGTGATTTTTATTAAAAATTTCGTAAAGGATTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/691927‑691779
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgattttctaaaaTCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAATTGTGAATGCGC  >  CP000730/691838‑691977
                                                                                                                                                                                                                                                                                                 
aaaagataTAAAACAAAAAAAGCACTTATCAAAAGATAAGTGTTAAAAAAATAACTGGGATGTGATTTTTATTAAAAATTTCGTAAAGGATTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATT                                                                                                                                                      <  2:670748/133‑1
GGAGGCTTTAAAACAAAAAAAGCACTTATCAAAAGATAAGTGTTAAAAAAATAACTGGGATGTGATTTTTATTAAAAATTTCGTAAAGGATTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATT                                                                                                                                                      <  2:670759/141‑1
 GAGGCTTTAAAACAAAAAAAGCACTTATCAAAAGATAAGTGTTAAAAAAATAACTGGGATGTGATTTTTATTAAAAATTTCGTAAAGGATTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTT                                                                                                                                                     >  1:966732/1‑141
 GAGGCTTTAAAACAAAAAAAGCACTTATCAAAAGATAAGTGTTAAAAAAATAACTGGGATGTGATTTTTATTAAAAATTTCGTAAAGGATTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTT                                                                                                                                                     >  1:823865/1‑141
  AGGCTTTAAAACAAAAAAAGCACTTATCAAAAGATAAGTGTTAAAAAAATAACTGGGATGTGATTTTTATTAAAAATTTCGTAAAGGATTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTT                                                                                                                                                    >  1:303724/1‑141
  AGGCTTTAAAACAAAAAAAGCACTTATCAAAAGATAAGTGTTAAAAAAATAACTGGGATGTGATTTTTATTAAAAATTTCGTAAAGGATTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTT                                                                                                                                                    <  1:136961/141‑1
   GGCTTTAAAACAAAAAAAGCACTTATCAAAAGATAAGTGTTAAAAAAATAACTGGGATGTGATTTTTATTAAAAATTTCGTAAAGGATTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTC                                                                                                                                                   >  1:227194/1‑141
      TTTAAAACAAAAAAAGCACTTATCAAAAGATAAGTGTTAAAAAAATAACTGGGATGTGATTTTTATTAAAAATTTCGTAAAGGATTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAA                                                                                                                                                >  1:325518/1‑141
      TTTAAAACAAAAAAAGCACTTATCAAAAGATAAGTGTTAAAAAAATAACTGGGATGTGATTTTTATTAAAAATTTCGTAAAGGATTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAA                                                                                                                                                >  1:98986/1‑141
      TTTAAAAAAAAAAAAGCACTTATCAAAAGATAAGTGTTAAAAAAATAACTGGGATGTGATTTTTATTAAAAATTTCGTAAAGGATTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAA                                                                                                                                                <  2:800821/141‑1
                                                                                          TTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTA                                                            >  1:953694/1‑141
                                                                                             TAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAG                                                         >  1:784598/1‑141
                                                                                               GAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTTTTTTttatct                                                       >  2:542770/1‑135
                                                                                                                                        CGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTTTATCTTCCAAATAATGATTAATTCTATTCGTATGCTCGTCATTAAA              >  2:199917/1‑141
                                                                                                                                        CGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAA              <  2:506143/141‑1
                                                                                                                                         GATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAATGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAAT             <  1:955906/141‑1
                                                                                                                                         GATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAAT             >  2:394060/1‑141
                                                                                                                                         GATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAAT             <  2:469391/141‑1
                                                                                                                                          ATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAATACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTCTGCTCATCATTAAATT            >  2:268344/1‑141
                                                                                                                                          ATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTACAAATAATGATTAATTCTATTCGTATGCTCATCATTAAATT            >  1:487619/1‑141
                                                                                                                                           TTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAATTG           <  2:898855/141‑1
                                                                                                                                           TTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAATTG           <  1:326598/141‑1
                                                                                                                                            TTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAATTGT          >  1:571398/1‑141
                                                                                                                                            TTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAATTGT          >  1:256250/1‑141
                                                                                                                                            TTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAATTGT          >  1:250837/1‑141
                                                                                                                                              TCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAATTGTGA        >  1:457505/1‑141
                                                                                                                                                  AAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAATTGTGAATGC    >  1:223695/1‑141
                                                                                                                                                  AAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAATTGTGAATGC    >  1:237499/1‑141
                                                                                                                                                    ATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAATTGTGAATGCGC  <  2:347173/141‑1
                                                                                                                                                    ATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAATTGTGAATGCGC  <  1:125439/141‑1
                                                                                                                                                                                                                                                                                                 
GGAGGCTTTAAAACAAAAAAAGCACTTATCAAAAGATAAGTGTTAAAAAAATAACTGGGATGTGATTTTTATTAAAAATTTCGTAAAGGATTTTAGAAAATCGTTTATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/691927‑691779
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgattttctaaaaTCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTTTAAAGCCTCCAAATAATGATTAATTCTATTCGTATGCTCATCATTAAATTGTGAATGCGC  >  CP000730/691838‑691977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.