BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	691779 =	101 (1.130)	3 (0.040)	3/248	15.1	3.2%	coding (43/1056 nt)	USA300HOU_0634	hypothetical protein
*	?	CP000730	691838 =	91 (1.130)	3 (0.040)	3/248	15.1	3.2%	intergenic (‑17/+44)	USA300HOU_0634/USA300HOU_0635	hypothetical protein/possible replication initiation protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 101 total aligned reads displayed.

TTTAATAAAAGAAGCTAATAAAAGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTT  >  CP000730/691642‑691917

tttAATAAAAGAAGCTAATAAAAGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑ttttt                                                                                                                                         <  1:739330/141‑1 (MQ=255)

tttAATAAAAGAAGCTAATAAAAGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑ttttt                                                                                                                                         >  1:646818/1‑141 (MQ=255)

gttAGTAAAAGAAGCTAATAAAAGAATTAACAAAATAGCTAATAGTGATTAAAAACAAATGACAATCATCTTACGACGATATTTAAATTTTGGAATTACTCGGCGTTTTTCTGTAGGAATAGCAAAATGCTTGCCG‑ttttt                                                                                                                                         >  2:484391/2‑141 (MQ=255)

 ttAATAAAAGAAGCTAATAAAAGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATGACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTa                                                                                                                                        <  1:10149/141‑1 (MQ=255)

  taataaAAGAAGCTAATAAAAGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAg                                                                                                                                       <  1:573696/141‑1 (MQ=255)

  taataaAAGAAGCTAATAAAAGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTAGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAg                                                                                                                                       >  1:12980/1‑141 (MQ=255)

    ataaAAGAAGCTAATAAAAGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGaa                                                                                                                                     <  2:179027/141‑1 (MQ=255)

         agaagCTAATAAAAGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCg                                                                                                                                >  2:736975/1‑141 (MQ=255)

             gCTAATAAAAGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGtt                                                                                                                            >  1:143189/1‑141 (MQ=255)

             gCTAATAAAAGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGtt                                                                                                                            >  1:470415/1‑141 (MQ=255)

             gCTAATAAAAGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGtt                                                                                                                            <  2:384650/141‑1 (MQ=255)

             gCTAATAAAAGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGtt                                                                                                                            <  2:368197/141‑1 (MQ=255)

             gCTAATAAAAGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGtt                                                                                                                            >  2:819960/1‑141 (MQ=255)

                 ataaAAGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAACTTTTGGAATTACTCGGCTTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTaaaa                                                                                                                        >  1:334891/1‑141 (MQ=255)

                 agaaaaGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTaaaa                                                                                                                        <  1:583640/139‑1 (MQ=255)

                   aaaaGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATg                                                                                                                      <  2:399887/141‑1 (MQ=255)

                     aaGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTGCGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTGTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTa                                                                                                                    <  1:32065/141‑1 (MQ=255)

                       gAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTGTTAAATGTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATAGTGTTAAAATggaat                                                                                                                  >  1:663907/1‑137 (MQ=255)

                           tAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCt                                                                                                              <  1:638555/141‑1 (MQ=255)

                            aaCAAGATAGCTAATAATGAGTAAAAGCAAATTACAATCATCTTACGGCGATTTTTAAATTTTGGAATGACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCtt                                                                                                             <  2:27775/141‑1 (MQ=255)

                            aaCAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCtt                                                                                                             >  1:347173/1‑141 (MQ=255)

                            aaCAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCtt                                                                                                             <  1:733881/141‑1 (MQ=255)

                            aaCAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCtt                                                                                                             <  2:866047/141‑1 (MQ=255)

                              cAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCttat                                                                                                           >  2:897819/1‑141 (MQ=255)

                                 aaTAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTtattat                                                                                                        >  1:541525/1‑141 (MQ=255)

                                   tAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTAttt                                                                                                      >  1:303333/1‑141 (MQ=255)

                                        aataatGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATa                                                                                                 >  2:819698/1‑141 (MQ=255)

                                          taatGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATaaa                                                                                               >  2:180644/1‑141 (MQ=255)

                                               aGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGAtt                                                                                          >  2:550700/1‑141 (MQ=255)

                                               aGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGAtt                                                                                          >  1:398718/1‑141 (MQ=255)

                                                gTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGAttt                                                                                         >  2:167543/1‑141 (MQ=255)

                                                 tAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGAtttt                                                                                        >  1:890508/1‑141 (MQ=255)

                                                  aaaaaCAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTc                                                                                       <  1:510102/141‑1 (MQ=255)

                                                   aaaaCAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCt                                                                                      <  1:83055/141‑1 (MQ=255)

                                                   aaaaCAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCt                                                                                      <  2:753245/141‑1 (MQ=255)

                                                   aaaaCAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCt                                                                                      <  1:595392/141‑1 (MQ=255)

                                                   aaaaCAAATTACAATCAGCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCt                                                                                      <  2:172537/141‑1 (MQ=255)

                                                    aaaCAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTa                                                                                     >  1:172208/1‑141 (MQ=255)

                                                    aaaCAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTAATTATTTTCATAAACGATGTTCTa                                                                                     >  1:323352/1‑141 (MQ=255)

                                                          aTTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATcc                                                                               >  1:210189/1‑141 (MQ=255)

                                                          aTTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATcc                                                                               >  2:381060/1‑141 (MQ=255)

                                                             aCAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCttt                                                                            >  1:960963/1‑141 (MQ=255)

                                                             aCAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCttt                                                                            <  2:38160/141‑1 (MQ=255)

                                                             aCAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCttt                                                                            >  2:568591/1‑141 (MQ=255)

                                                             aCAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGAGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCttt                                                                            >  1:765233/1‑141 (MQ=255)

                                                              cAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTa                                                                           <  2:500937/141‑1 (MQ=255)

                                                              cAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTa                                                                           <  2:396742/141‑1 (MQ=255)

                                                                ctcgtcTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACg                                                                         <  2:905913/137‑1 (MQ=255)

                                                                accatcatACGACGATTTTTAAATTTTGGAATTACTCGGATTTGTTCTTTAGGAATATCAACACGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTTCTTGCTTATTATTCTCATAAACGTTTTACTAAAATCCTTTACg                                                                         <  1:903140/139‑1 (MQ=255)

                                                                 tcatcTTACGTTGAGGTGTAAATTTTATTTTTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCTTGTTTTAATAGACTTGCTTAGTAATGTCATAAACGATTTTCTAAAATCCTTTACgt                                                                        <  2:482202/141‑2 (MQ=255)

                                                                          gacgaTTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTtaa                                                               <  2:948632/141‑1 (MQ=255)

                                                                            cgaggtttAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCGTTTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATACTTTAAACAATTTAtaat                                                              >  2:762986/6‑141 (MQ=255)

                                                                            cgaTTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTTAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTtaata                                                             >  2:511894/1‑141 (MQ=255)

                                                                            cgaTTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTtaata                                                             <  1:917057/141‑1 (MQ=255)

                                                                            cgaTTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTtaata                                                             <  2:721667/141‑1 (MQ=255)

                                                                               tttttAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATaaaa                                                          >  1:908020/1‑141 (MQ=255)

                                                                               tttttAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATaaaa                                                          <  1:56645/141‑1 (MQ=255)

                                                                                 tttAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAAt                                                        <  1:616862/141‑1 (MQ=255)

                                                                                 tttAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAAt                                                        <  2:450700/141‑1 (MQ=255)

                                                                                 tttAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTAAATAAAAAt                                                        <  1:851095/141‑1 (MQ=255)

                                                                                   tAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATCAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATca                                                      >  2:697315/1‑141 (MQ=255)

                                                                                   tAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATca                                                      >  2:401278/1‑141 (MQ=255)

                                                                                         ttGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATccc                                                <  2:308005/141‑1 (MQ=255)

                                                                                           ggAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAg                                              <  1:518345/141‑1 (MQ=255)

                                                                                           ggAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTCTTAATAAAAATCACATCCCAg                                              <  1:474990/141‑1 (MQ=255)

                                                                                            gAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGt                                             <  1:856249/141‑1 (MQ=255)

                                                                                              aTTACTCGGCGTTGTTCTTTTGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTa                                           <  1:342987/141‑1 (MQ=255)

                                                                                               ttACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTAt                                          <  1:644578/141‑1 (MQ=255)

                                                                                                tACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTAtt                                         <  1:136156/141‑1 (MQ=255)

                                                                                                tACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTAtt                                         <  1:573898/141‑1 (MQ=255)

                                                                                                 aCTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTAttt                                        <  1:948349/141‑1 (MQ=255)

                                                                                                 aCTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTAttt                                        <  1:585478/141‑1 (MQ=255)

                                                                                                 aCTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTAttt                                        >  2:373335/1‑141 (MQ=255)

                                                                                                 aCTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTAttt                                        <  1:819960/141‑1 (MQ=255)

                                                                                                   tCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTAttttt                                      >  1:724869/1‑141 (MQ=255)

                                                                                                      gCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTACAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTa                                   >  2:361221/1‑141 (MQ=255)

                                                                                                      gCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTa                                   >  2:403460/1‑141 (MQ=255)

                                                                                                      gCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTa                                   >  1:826063/1‑141 (MQ=255)

                                                                                                        gttgttCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAac                                 <  1:819698/141‑1 (MQ=255)

                                                                                                        gttgttCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAac                                 <  1:934315/141‑1 (MQ=255)

                                                                                                         ttgttCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAaca                                <  2:470415/141‑1 (MQ=255)

                                                                                                          tgttCTTTAGGAATATCAACTGGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATCTTTTTAacac                               <  1:496065/141‑1 (MQ=255)

                                                                                                          tgttCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAacac                               <  1:383339/141‑1 (MQ=255)

                                                                                                            ttCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACtt                             <  2:965584/141‑1 (MQ=255)

                                                                                                            ttCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACtt                             >  1:135529/1‑141 (MQ=255)

                                                                                                              cTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTAt                           >  2:341758/1‑141 (MQ=255)

                                                                                                                ttAGGAATATCAATATGCTTTCCG‑TTTTTAGAAACTCGTGTTAAAATGTACGTGCTTATTATTGTCATAAACGATTTTCTAAAATCCTTTACGAAACTTTTAATAAAAATCACATCCCGGTTATTTCTTTACCACTTctct                         <  2:629048/141‑1 (MQ=255)

                                                                                                                 tAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCtt                        >  1:717848/1‑141 (MQ=255)

                                                                                                                 tAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCtt                        >  1:506143/1‑141 (MQ=255)

                                                                                                                    gAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTg                     >  1:9234/1‑141 (MQ=255)

                                                                                                                       tatCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATa                  <  2:250562/141‑1 (MQ=255)

                                                                                                                         tCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTAATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAg                >  1:949856/1‑141 (MQ=255)

                                                                                                                           aaaaTGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTg              <  2:785762/141‑1 (MQ=255)

                                                                                                                             aaTGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCt            <  2:65785/141‑1 (MQ=255)

                                                                                                                             aaTGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCt            <  1:561780/141‑1 (MQ=255)

                                                                                                                              aTGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCtt           <  1:262475/141‑1 (MQ=255)

                                                                                                                                     ccG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGt    <  1:650899/141‑1 (MQ=255)

                                                                                                                                       g‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGttt  >  1:564953/1‑141 (MQ=255)

                                                                                                                                       g‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGttt  <  2:896367/141‑1 (MQ=255)

                                                                                                                                       g‑TTTTTAGAAAAACGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATGCTTTACGAAAAAAATAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGttt  <  2:511008/141‑1 (MQ=255)

TTTAATAAAAGAAGCTAATAAAAGAATTAACAAAATAGCTAATAATGAGTAAAAACAAATTACAATCATCTTACGACGATTTTTAAATTTTGGAATTACTCGGCGTTGTTCTTTAGGAATATCAAAATGCTTTCCG‑TTTTTAGAAAATCGTGTTAAAATGTACTTGCTTATTATTTTCATAAACGATTTTCTAAAATCCTTTACGAAATTTTTAATAAAAATCACATCCCAGTTATTTTTTTAACACTTATCTTTTGATAAGTGCTTTTTTTGTTT  >  CP000730/691642‑691917

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.