Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	CP000730	819,056	Δ596 bp		[ytxJ]	[ytxJ]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP000730	819056	819651	596	39 [0]	[0] 39	[ytxJ]	[ytxJ]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 819055	0 (0.000)	39 (1.030)	32/276	0.3	100%	coding (2/321 nt)	ytxJ	hypothetical protein
	?	CP000730	819652 =	0 (0.000)					intergenic (+278/‑147)	ytxJ/glxK	hypothetical protein/glycerate kinase

AAAGTTAAAAATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/818916‑819055 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAAAAAACGTATCACAACAAATAATAAAGTAAGGTGG  >  CP000730/819652‑819790                                                                                                                                                                                                                                                                                         attGTTAATAATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCATATGCTATTTAAATGTGATAAATATTTTTAGAGGTGTATAGAGTA                                                                                                                                            >  2:41084/4‑141       AAAAATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATAT                                                                                                                                      >  1:135329/1‑141         AAATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTG                                                                                                                                    <  1:107915/141‑1          AATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGT                                                                                                                                   <  1:271300/141‑1          AATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGT                                                                                                                                   >  1:334355/1‑141          AATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGT                                                                                                                                   <  2:402640/141‑1              TTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATT                                                                                                                               >  1:122075/1‑141              TTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATT                                                                                                                               >  1:293449/1‑141              TTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATT                                                                                                                               >  1:118999/1‑141                  ATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACT                                                                                                                           <  2:88045/141‑1                    TTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGG                                                                                                                         <  1:256238/141‑1                           TAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATT                                                                                                                  <  1:347629/141‑1                                     ACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATG                                                                                                        >  1:158367/1‑141                                                  ATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGT                                                                                           >  1:68913/1‑141                                                      TGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGC                                                                                       >  1:146670/1‑141                                                          AAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATAT                                                                                   >  1:350774/1‑141                                                          AAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATAT                                                                                   >  1:50139/1‑141                                                           AACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATA                                                                                  >  1:74423/1‑141                                                                  ATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTACAGGTTAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGA                                                                           <  1:110188/141‑1                                                                       AACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAA                                                                      >  2:97988/1‑141                                                                            TATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCT                                                                 <  2:146670/141‑1                                                                                   AAAAATGTCGCGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTT                                                          >  1:358880/1‑141                                                                                                    GCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATG                                         <  1:126904/141‑1                                                                                                     CTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATAGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAATATTAATCTTTTATGA                                        >  2:15688/1‑141                                                                                                         TTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAA                                    <  1:149253/141‑1                                                                                                               GTGATAAATATTTTTATTGTTGTGTTGAGTAGCAGATGGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCTCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAAAAAACG                              >  2:90312/1‑141                                                                                                               GTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGTAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAAAAAACG                              >  2:119462/1‑141                                                                                                               GTGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAAAAAACG                              <  1:392711/141‑1                                                                                                                TGATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAAAAAACGT                             <  1:274013/141‑1                                                                                                                 GATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAAAAAACGTA                            >  1:189827/1‑141                                                                                                                  ATAAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAAAAAACGTAT                           <  2:187300/141‑1                                                                                                                    AAATATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAAAAAACGTATCA                         >  1:115859/1‑141                                                                                                                       TATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAAAAAACGTATCACAA                      >  2:226394/1‑141                                                                                                                       TATTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAAAAAACGTATCACAA                      <  1:147518/141‑1                                                                                                                         gTTTTAGAGGTGAATAGAGGAGCATATTGTTATTTACTGGAATAATTAATAATTATGTCATGTTAAATGTTCGTATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAAAAAACGTATCACAACA                    <  2:92329/140‑1                                                                                                                         TTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAAAAAACGTATCACAACA                    >  1:310562/1‑141                                                                                                                         TTTTTAGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTAATGAATAAAAAACGTATCACAACA                    <  2:182777/141‑1                                                                                                                              AGAGGTGAATAGAGTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAAAAAACGTATCACAACAAATAA               <  1:354562/141‑1                                                                                                                                           GTAGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAAAAAACGTATCACAACAAATAATAAAGTAAGGTGG  >  2:324330/1‑141                                                                                                                                                                                                                                                                                         AAAGTTAAAAATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/818916‑819055 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCATATTGTTATTTACTGGAATAATTAATAATCATGTCATGTTAAATGTTCGCATATAATCACGAGATAAAATCTAAAATTTAAGATTAATCTTTTATGAATAAAAAACGTATCACAACAAATAATAAAGTAAGGTGG  >  CP000730/819652‑819790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.