Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	CP000730	819,056	Δ596 bp		[ytxJ]	[ytxJ]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP000730	819056	819651	596	39 [0]	[0] 39	[ytxJ]	[ytxJ]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 819055	0 (0.000)	39 (1.030)	32/276	0.3	100%	coding (2/321 nt)	ytxJ	hypothetical protein
	?	CP000730	819652 =	0 (0.000)					intergenic (+278/‑147)	ytxJ/glxK	hypothetical protein/glycerate kinase

AAAGTTAAAAATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTGGCTATAAAGCTAAGTTCAATTGACCAATTTGAACAGGTTATTGAGGAAAATAAATATGTTTTTGTATTAAAACATAGTGAAACTTGTCCAATATCGGCAAATGCGTACGATCAATTTAATAAATTTTTATATGAACGC  >  CP000730/818916‑819194                                                                                                                                            |                                                                                                                                            attgttaATAATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCATATGCTATTTAAATGTGATAAATATTTTTAGAGGTGTATAGAGTa                                                                                                                                            >  2:41084‑M1/4‑140 (MQ=255)       aaaaaTTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatat                                                                                                                                      >  1:135329‑M1/1‑134 (MQ=255)         aaaTTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattg                                                                                                                                    <  1:107915‑M1/141‑10 (MQ=255)          aaTTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgt                                                                                                                                   <  1:271300‑M1/141‑11 (MQ=255)          aaTTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgt                                                                                                                                   >  1:334355‑M1/1‑131 (MQ=255)          aaTTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgt                                                                                                                                   <  2:402640‑M1/141‑11 (MQ=255)              ttGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatt                                                                                                                               >  1:122075‑M1/1‑127 (MQ=255)              ttGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatt                                                                                                                               >  1:293449‑M1/1‑127 (MQ=255)              ttGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatt                                                                                                                               >  1:118999‑M1/1‑127 (MQ=255)                  aTTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttact                                                                                                                           <  2:88045‑M1/141‑19 (MQ=255)                    ttATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactgg                                                                                                                         <  1:256238‑M1/141‑21 (MQ=255)                           tAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataatt                                                                                                                  <  1:347629‑M1/141‑28 (MQ=255)                                     aCTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatg                                                                                                        >  1:158367‑M1/1‑104 (MQ=255)                                                  ataATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgt                                                                                           >  1:68913‑M1/1‑91 (MQ=255)                                                      tGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgc                                                                                       >  1:146670‑M1/1‑87 (MQ=255)                                                          aaaCATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatat                                                                                   >  1:350774‑M1/1‑83 (MQ=255)                                                          aaaCATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatat                                                                                   >  1:50139‑M1/1‑83 (MQ=255)                                                           aaCATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatata                                                                                  >  1:74423‑M1/1‑82 (MQ=255)                                                                  atatTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTACAGGTTAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacga                                                                           <  1:110188‑M1/141‑67 (MQ=255)                                                                       aaCTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataa                                                                      >  2:97988‑M1/1‑70 (MQ=255)                                                                            tatGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatct                                                                 <  2:146670‑M1/141‑77 (MQ=255)                                                                                   aaaaaTGTCGCGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaattt                                                          >  1:358880‑M1/1‑58 (MQ=255)                                                                                                    gCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatg                                         <  1:126904‑M1/141‑101 (MQ=255)                                                                                                     cTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatatagttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaatattaatcttttatga                                        >  2:15688‑M1/1‑40 (MQ=255)                                                                                                         ttAAATGTGATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataa                                    <  1:149253‑M1/141‑106 (MQ=255)                                                                                                               gtgATAAATATTTTTATTGTTGTGTTGAGTagcagatggttatttactggaataattaataatcatgtcatgttaaatgttctcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacg                              >  2:90312‑M1/1‑30 (MQ=255)                                                                                                               gtgATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactgtaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacg                              >  2:119462‑M1/1‑30 (MQ=255)                                                                                                               gtgATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacg                              <  1:392711‑M1/141‑112 (MQ=255)                                                                                                                tgATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgt                             <  1:274013‑M1/141‑113 (MQ=255)                                                                                                                 gATAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgta                            >  1:189827‑M1/1‑28 (MQ=255)                                                                                                                  aTAAATATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtat                           <  2:187300‑M1/141‑115 (MQ=255)                                                                                                                    aaaTATTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatca                         >  1:115859‑M1/1‑25 (MQ=255)                                                                                                                       tatTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaa                      >  2:226394‑M1/1‑22 (MQ=255)                                                                                                                       tatTTTTAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaa                      <  1:147518‑M1/141‑120 (MQ=255)                                                                                                                         tttttAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaaca                    >  1:310562‑M1/1‑20 (MQ=255)                                                                                                                         tttttAGAGGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatctttaatgaataaaaaacgtatcacaaca                    <  2:182777‑M1/141‑122 (MQ=255)                                                                                                                         gttttaGAGGTGAATAGAGGagcatattgttatttactggaataattaataattatgtcatgttaaatgttcgtatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaaca                    <  2:92329‑M1/140‑122 (MQ=255)                                                                                                                              agagGTGAATAGAGTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaacaaataa               <  1:354562‑M1/141‑127 (MQ=255)                                                                                                                                           gTagcatattgttatttactggaataattaataatcatgtcatgttaaatgttcgcatataatcacgagataaaatctaaaatttaagattaatcttttatgaataaaaaacgtatcacaacaaataataaagtaaggtgg  >  2:324330‑M1/1‑2 (MQ=255)                                                                                                                                            |                                                                                                                                            AAAGTTAAAAATTTTGAATTTATGGTTAACATGTCAACTTACTATGTGTATAATGGTAAACATTGATATTAACTATATGTATAAAAATGTCACGCAGATGCTATTTAAATGTGATAAATATTTTTAGAGGTGAATAGAGTGGCTATAAAGCTAAGTTCAATTGACCAATTTGAACAGGTTATTGAGGAAAATAAATATGTTTTTGTATTAAAACATAGTGAAACTTGTCCAATATCGGCAAATGCGTACGATCAATTTAATAAATTTTTATATGAACGC  >  CP000730/818916‑819194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑