| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1292768 | 33 (0.870) | 4 (0.110) | 4/262 | 5.6 | 11.9% | intergenic (+322/‑64) | infB/rbfA | translation initiation factor IF‑2/ribosome‑binding factor A |
| ? | CP000730 | = 1292797 | 28 (0.780) | intergenic (+351/‑35) | infB/rbfA | translation initiation factor IF‑2/ribosome‑binding factor A | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGGTGGCCTAGAATGATTTTTAATGACAAAATATAATGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1292622‑1292768‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aattgttATTTGCATTTTTTAGTGTAACAATGCTTAAACAATTATTTTAGCTCACACGTTATTTTAATAAATTAAGCCTATAAAATCAAATAAAGTTTGCCGTAAGATAGGCATTTCAACAGAAAATTTTCCAATAATAGTCGACAT < CP000730/1292797‑1292658 GTGGTGGCCTAGAATGATTTTTAATGACAAAATATAATGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATA > 2:268342/1‑141 TGGTGGCCTAGAATGATTTTTAATGACAAAATATAATGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAA > 1:415228/1‑141 TGGTGGCCTAGAATGATTTTTAATGACAAAATATAATGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAA > 1:277052/1‑141 GCCTAGAATGATTTGTAATGACAAAATATAATGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTT < 2:340212/141‑1 TAATGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTATTTGCATTTTTTAGTGTAACAATGCTT < 2:27360/141‑1 GACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTATTTGCATTTTTTAGTGTAACAATGCTTAAACAAT < 1:265898/141‑1 TATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTATTTGCATTTTTTAGTGTAACAATGCTTAAACAATTAT < 2:44985/141‑1 TTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTATTTGCATTTTTTAGTGTAACAATGCTTAAACAATTATTT < 2:79812/141‑1 TATTTGCATTTTTTAGTGTAACAATGCTTAAACAATTATTTTAGCTCACACGTTATTTTAATAAATTAAGCCTATAAAATCAAATAAAGTTTGCCGTAAGATAGGCATTTCAACAGAAAATTTTCCAATAATAGTCGACAT > 1:189812/1‑141 TATTTGCATTTTTTAGTGTAACAATGCTTAAACAATTATTTTAGCTCACACGTTATTTTAATAAATTAAGCCTATAAAATCAAATAAAGTTTGCCGTAAGATAGGCATTTCAACAGAAAATTTTCCAATAATAGTCGACAT > 1:347302/1‑141 TATTGGCATTTTTTAGTGTAACAATGCTTAAACAATTATTTTAGCTCACACGTTATTTTAATAAATTAAGCCTATAAAATCAAATAAAGTTTTCCGTAAGATAGGCATTTCAACAGAAAAGTTTCCAATAATAGTCGACAT > 2:22241/1‑141 GTGGTGGCCTAGAATGATTTTTAATGACAAAATATAATGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1292622‑1292768‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aattgttATTTGCATTTTTTAGTGTAACAATGCTTAAACAATTATTTTAGCTCACACGTTATTTTAATAAATTAAGCCTATAAAATCAAATAAAGTTTGCCGTAAGATAGGCATTTCAACAGAAAATTTTCCAATAATAGTCGACAT < CP000730/1292797‑1292658 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |