New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1292768	33 (0.870)	4 (0.110)	4/262	5.6	11.9%	intergenic (+322/‑64)	infB/rbfA	translation initiation factor IF‑2/ribosome‑binding factor A
	?	CP000730	= 1292797	28 (0.780)					intergenic (+351/‑35)	infB/rbfA	translation initiation factor IF‑2/ribosome‑binding factor A
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCTAGAATGATTTTTAATGACAAAATATAATGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATGAGAGCAGAGCGTGTTGGTGAACAAATGAAGAAGGAATTAATGGATATCATCAACAATAAAGTCA  >  CP000730/1292628‑1292907                                                                                                                                             |                                                                                                                                            gCCTAGAATGATTTGTAATGACAAAATATAATGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGtt                                                                                                                                             <  2:340212/141‑1 (MQ=255)           aTTTTTAATGACAAAATATAATGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGt                                                                                                                                   >  1:128919/1‑141 (MQ=255)            tttttAATGACAAAATATAATGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGtt                                                                                                                                  <  2:265786/141‑1 (MQ=255)                    gACAAAATATAATGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTaaa                                                                                                                          <  1:338453/141‑1 (MQ=255)                     aCAAAATATAATGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTaaaa                                                                                                                         >  1:383810/1‑141 (MQ=255)                       aaaaTATAATGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTaaaaaa                                                                                                                       <  2:88682/141‑1 (MQ=255)                               aTGTCGACTATTATTGGAAACTTTTCTGTTGAAATGCCTATCTTACGGAAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCCAATa                                                                                                               <  2:22241/141‑1 (MQ=255)                               aTGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATa                                                                                                               <  1:189812/141‑1 (MQ=255)                               aTGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATa                                                                                                               <  1:347302/141‑1 (MQ=255)                                       tattatTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGa                                                                                                       >  1:107481/1‑141 (MQ=255)                                              ggAAAATTTTCTGTTGAAATGCCTATCTTACTGCAAACTTTATTTGATTTTATAAGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTtaaa                                                                                                <  2:121947/141‑1 (MQ=255)                                              agAAAATTTTCTGTTGAAATGCCTATATTACGGCAAACTTTATATGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGAAAAAAAAAAAAAAAAAATGCAAATAACAATTGAACTtaaa                                                                                                <  2:30133/140‑1 (MQ=255)                                                     tttCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTtaaagataaag                                                                                         <  2:165072/141‑1 (MQ=255)                                                      ttCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTtaaagataaaga                                                                                        >  2:45946/1‑141 (MQ=255)                                                           ttGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATAAAAAAAAAAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGa                                                                                   <  2:240218/141‑1 (MQ=255)                                                            tGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGAc                                                                                  <  2:27992/141‑1 (MQ=255)                                                                aTGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGa                                                                              <  1:223486/141‑1 (MQ=255)                                                                     tATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAg                                                                         >  2:262125/1‑141 (MQ=255)                                                                      aTCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGc                                                                        >  1:261519/1‑141 (MQ=255)                                                                             ggCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATga                                                                 <  1:363853/141‑1 (MQ=255)                                                                             ggCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATga                                                                 >  2:265788/1‑141 (MQ=255)                                                                              gCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATgag                                                                >  1:321044/1‑141 (MQ=255)                                                                                         ttGATTTTATATGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTACGAGAGCAGAGCgtg                                                     <  2:408046/141‑1 (MQ=255)                                                                                                     gCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATGAGAGCAGAGCGTGTTGGTGAACaaa                                         <  2:107481/141‑1 (MQ=255)                                                                                                           tttATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATGAGAGCAGAGCGTGTTGGTTAACAAATgaaga                                   <  2:141500/141‑1 (MQ=255)                                                                                                            ttattaAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATGAGAGCAGAGCGTGTTGGTGAACAATTgaagaa                                  >  2:395571/1‑141 (MQ=255)                                                                                                                  aaaTAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATGAGAGCAGAGCGTGTTGGTGAACAAATGAAGAAGGAAtt                            >  2:15860/1‑141 (MQ=255)                                                                                                                      aaCGTTTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATGAGAGCAGAGCGTGTTGGTGAACAAATGAAGAAGGAATTAATg                        <  1:336432/141‑1 (MQ=255)                                                                                                                           gtgAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATGAGAGCAGAGCGTGTTGGTGAACAAATGAAGAAGGAATTAATGGatat                   >  2:335209/1‑141 (MQ=255)                                                                                                                               gCTAAAAGAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATGAGAGCAGAGCGTGTTGGTTAACAAATGAAGAAGGAATTAATGGATatcatc               <  1:148295/141‑1 (MQ=255)                                                                                                                                cTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATGAGAGCAGAGCGTGTTGGTGAACAAATGAAGAAGGAATTAATGGTTAtcatca              <  1:274626/141‑1 (MQ=255)                                                                                                                                      gatttGTTTAAGCATTGTTACACCGAAAAATGTAAATAACAATTGAACTGCAAGATAAAGAGGGGACAAGAATGTGCAGTATGAGAGCAGAGCGTGTTGGTGGACAAAGGAAGAAGGAGTTTATGGATATCATAAACAATa        <  2:97121/138‑1 (MQ=255)                                                                                                                                          tGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATGAGAGCAGAGCGTGTTGGTGAACAAATGAAGAAGGAATTAATGGATATCATCAACAATAAAGt    >  2:146158/1‑141 (MQ=255)                                                                                                                                            tttAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATGAGAGCAGAGCGTGTTGGTGAACAAATGAAGAAGGAATTAATGGATATCATCAACAATAAAGTCa  >  1:43391/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                            GCCTAGAATGATTTTTAATGACAAAATATAATGTCGACTATTATTGGAAAATTTTCTGTTGAAATGCCTATCTTACGGCAAACTTTATTTGATTTTATAGGCTTAATTTATTAAAATAACGTGTGAGCTAAAATAATTGTTTAAGCATTGTTACACTAAAAAATGCAAATAACAATTGAACTTAAAGATAAAGAGGTGACAAGAATGAGCAGTATGAGAGCAGAGCGTGTTGGTGAACAAATGAAGAAGGAATTAATGGATATCATCAACAATAAAGTCA  >  CP000730/1292628‑1292907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.