New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1325375 =	31 (0.820)	3 (0.080)	3/258	6.1	8.3%	coding (132/543 nt)	glpP	glycerol uptake operon antiterminator
	?	CP000730	1325473 =	37 (1.040)					coding (230/543 nt)	glpP	glycerol uptake operon antiterminator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGATATGCATATAGGACATATAAAAAGTATTATGGAATTGCTGAAGCAAAATCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGTATTTATTATTGATAGTCAAGCATTGAAACGCAGTATAGATTTGATAAAAAAAGTTGAA  >  CP000730/1325339‑1325612                                                                                                                                       |                                                                                                                                            aGATATGCATATAAGAAATATAAAAAGTATTATGGAATTGCTGAAGCAAAATCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGcc                                                                                                                                       <  2:174820/141‑1 (MQ=255)      tGCATATAGGACATATAAAAAGTATTATGGAATTGCTGAAGCAAAATCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAg                                                                                                                                  <  2:72464/141‑1 (MQ=255)       gCATATAGGACATATAAAAAGTATTATGGAATTGCTGAAGCAAAATCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAgg                                                                                                                                 <  1:415289/141‑1 (MQ=255)              ggACATATAAAAAGTATTATGGAATTGCTGAAGCAAAATCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGgtatcgta                                                                                                                          >  2:297699/1‑141 (MQ=255)                    ataAAAAGTATTATGGAATTGCTGAAGCAAAATCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACt                                                                                                                    <  2:279781/141‑1 (MQ=255)                      aaaaaGTATTATGGAATTGCTGAAGCAAAATCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTaa                                                                                                                  <  2:338628/141‑1 (MQ=255)                                atGGAATTGCTGAAGCAAAATCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGta                                                                                                        <  1:248252/141‑1 (MQ=255)                                atGGAATTGCTGAAGCAAAATCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGta                                                                                                        <  1:221246/141‑1 (MQ=255)                                atGGAATTGCTGAAGCAAAATCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGta                                                                                                        >  1:286505/1‑141 (MQ=255)                                        gCTGAAGCAAAATCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATaaaaaa                                                                                                >  2:3957/1‑141 (MQ=255)                                          tGAAGCAAAATCATATAGAGTGTTTTATTCATAAAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGTAAGTGAATTTATTATTCAGCAATACAAGCCAACAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAg                                                                                              >  2:358899/1‑141 (MQ=255)                                           gAAGCAAAATCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGc                                                                                             >  2:401598/1‑141 (MQ=255)                                                  aaTCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCa                                                                                      <  2:61663/141‑1 (MQ=255)                                                    tCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAACAGCTAAATCAtt                                                                                    >  2:276249/1‑141 (MQ=255)                                                    tCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCAtt                                                                                    >  2:227724/1‑141 (MQ=255)                                                                   tATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGAt                                                                     >  1:213943/1‑141 (MQ=255)                                                                   tATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGAt                                                                     >  2:23289/1‑141 (MQ=255)                                                                   tATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGAt                                                                     >  2:142427/1‑141 (MQ=255)                                                                        atatAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTa                                                                <  1:257457/141‑1 (MQ=255)                                                                         tataGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTag                                                               >  1:363136/1‑141 (MQ=255)                                                                           taGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTagag                                                             <  1:207081/141‑1 (MQ=255)                                                                           taGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAACAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTagag                                                             >  1:332147/1‑141 (MQ=255)                                                                             gATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGta                                                           >  2:301367/1‑141 (MQ=255)                                                                               tttGATAAAAGGTTTAAGCCACGAAGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAAGCATTAAATACTTTAACGAATTTAAGAGtatt                                                         >  2:69132/1‑141 (MQ=255)                                                                                 tGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGtattta                                                       >  1:71862/1‑141 (MQ=255)                                                                                  gATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGtatttat                                                      >  2:334504/1‑141 (MQ=255)                                                                                   aTAAAAGGTTTAAGCAACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATATAAAAAAAAAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGtatttatt                                                     <  2:71566/141‑1 (MQ=255)                                                                                      aaaGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGAAATAGAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGTATTTattatt                                                  <  2:354324/141‑1 (MQ=255)                                                                                           tttAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGTATTTATTATTGATAg                                             >  1:263933/1‑141 (MQ=255)                                                                                             tAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGTATTTATTATTGATAGTc                                           <  1:199976/141‑1 (MQ=255)                                                                                              aaGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAAACTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTCCACGATTTTTCGAGTATTTATTATTGATAGTCa                                          <  2:326737/141‑1 (MQ=255)                                                                                                gCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGTATTTATTATTGATAGTCAAg                                        >  2:316800/1‑141 (MQ=255)                                                                                                   aCGATGAATTTGCAAGTGACTATTTCACCCACCAACACGATCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGTATTTATTATTGATAGTCAAGCAt                                     <  1:78676/141‑1 (MQ=255)                                                                                                          aTTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGTATTTATTATTGATAGTCAAGCATTGAAACg                              <  1:60820/141‑1 (MQ=255)                                                                                                             tGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGTATTNATTATTGATAGTNAAGCATTGAAACGCAg                           <  1:227724/141‑1 (MQ=255)                                                                                                                         tattatTCAGAAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGTATTTATTATTGATAGTCAAGCATTGAAACGCAGTATAGATTTGAt               <  2:233934/141‑1 (MQ=255)                                                                                                                           ttattCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGTATTTATTATTGATAGTCAAGCATTGAAACGCAGTATAGATTTGATaa             <  1:388398/141‑1 (MQ=255)                                                                                                                              ttCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATATTTAGATTATTTATTATTGATAGTCAAGCATTTAAACGCAGAAAAGATTTGATaaaaa          >  1:228145/1‑141 (MQ=255)                                                                                                                                   cAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGTATTTATTATTGATAGTCAAGCATTGAAACGCAGTATAGATTTGATAAAAAAAGtt     >  1:116686/1‑141 (MQ=255)                                                                                                                                   cAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGTATATATTATTGATAGTCAAGCATTGAAACGCACTATAGATTTGATaaacaatgat     >  1:331592/1‑137 (MQ=255)                                                                                                                                      tACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGTATTTATTATTGATAGTCAAGCATTGAAACGCAGTATAGATTTGATAAAAAAAGTTGaa  >  2:303189/1‑141 (MQ=255)                                                                                                                                       |                                                                                                                                            AGATATGCATATAGGACATATAAAAAGTATTATGGAATTGCTGAAGCAAAATCATATAGAGTGTTTTATTCATATAGATTTGATAAAAGGTTTAAGCCACGATGAATTTGCAAGTGAATTTATTATTCAGCAATACAAGCCAAAAGGTATCGTATCGACTAAATCTAAAGTAATAAAAAAAGCTAAATCATTAAATACTTTAACGATTTTTAGAGTATTTATTATTGATAGTCAAGCATTGAAACGCAGTATAGATTTGATAAAAAAAGTTGAA  >  CP000730/1325339‑1325612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.