| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1601461 | 3 (0.040) | 6 (0.080) | 6/262 | 12.0 | 67.8% | coding (132/177 nt) | USA300HOU_1484 | hypothetical bacteriophage protein |
| ? | CP000730 | = 1601491 | NA (NA) | coding (102/177 nt) | USA300HOU_1484 | hypothetical bacteriophage protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
ATCATTCATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1601318‑1601461‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagttaCCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATGAT < CP000730/1601491‑1601352 ATCATTCATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAG < 1:717414/141‑1 CATTCATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTT < 2:532279/141‑1 CATTCATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTT < 2:381854/141‑1 TCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGCCAGTgataact < 2:13508/141‑8 ATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTACCAAGCTGACAAG > 1:151697/1‑141 TGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTATCA‑‑CTGACAAGGTAGGACTT < 1:520130/141‑1 AGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTATCA‑‑CTGACAAGGTAGGACTTGCCAGTGAT < 1:515349/141‑1 GATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTACCAAGCTGACAAGGTAGGACTTGCCAGTGA < 1:734922/141‑1 TCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTACCAAGCTGACAAGGTAGGACTTGCCAGTGATA < 2:680864/141‑1 CATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTACCAAGCTGACAAGGTAGGA‑ATGCCAGTGATAACTGTCAACAAATAGCAAA < 2:151697/141‑1 GTTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACAT < 1:156121/141‑1 TTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAGCATG < 2:76079/141‑1 TTACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATG < 2:514523/141‑1 ACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATGAT > 2:269674/1‑141 ACCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATGAT > 1:649596/1‑141 ATCATTCATCCAAAAGATAGAGTTGTCAGTTTAGATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1601318‑1601461‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagttaCCAAGCTGACAAGGTAGGACTTGCCAGTGATAACTGTCAACAAATAGCAAATAACTATAAGCACTATGGATTTTAAGATGGATAAGGACTATCGTTATTCTTTTCACCTTTAACGTTAATGTCGAAATACAAAACATGAT < CP000730/1601491‑1601352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |