New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1601461	3 (0.040)	6 (0.080)	6/262	12.0	67.8%	coding (132/177 nt)	USA300HOU_1484	hypothetical bacteriophage protein
	?	CP000730	= 1601491	NA (NA)					coding (102/177 nt)	USA300HOU_1484	hypothetical bacteriophage protein
Rejected: Coverage evenness skew score above cutoff.

TTATCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTTC  >  CP000730/1601459‑1601601   |                                                                                                                                             ttATCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTtgttgt    <  2:495257/141‑1 (MQ=31)   aTCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTtc  >  1:164413/1‑141 (MQ=32)   aTCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTtc  >  2:320643/1‑141 (MQ=32)   |                                                                                                                                             TTATCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTTC  >  CP000730/1601459‑1601601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.