New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1601461	3 (0.040)	6 (0.080)	6/262	12.0	67.8%	coding (132/177 nt)	USA300HOU_1484	hypothetical bacteriophage protein
	?	CP000730	= 1601491	NA (NA)					coding (102/177 nt)	USA300HOU_1484	hypothetical bacteriophage protein
Rejected: Coverage evenness skew score above cutoff.

TTATCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTTCCTCCTTTTAAGTTGTTTATGTCCATT  >  CP000730/1601459‑1601627                                 |                                                                                                                                         ttATCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTtgttgt                              <  2:495257/141‑1 (MQ=31)   aTCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTtc                            >  1:164413/1‑141 (MQ=32)   aTCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTtc                            >  2:320643/1‑141 (MQ=32)    tCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCCAGAAGTCAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTtcc                           <  2:217420/141‑1 (MQ=17)    tCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTtcc                           <  2:574858/141‑1 (MQ=32)    tCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTtcc                           <  2:168255/141‑1 (MQ=32)     cACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTtcct                          <  2:822860/141‑1 (MQ=32)      aCTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTtcctc                         >  2:379579/1‑141 (MQ=32)          gCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTTCCTCCttt                     <  1:223640/141‑1 (MQ=32)           cAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTTCCTCCtttt                    <  1:371682/141‑1 (MQ=32)             aGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTTCCTCCTTTTaa                  <  2:35844/141‑1 (MQ=32)              gTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTTCCTCCTTTTAAg                 >  1:531684/1‑141 (MQ=32)                 cTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTTCCTCCTTTTAAgttg              >  1:236836/1‑141 (MQ=35)                 cTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTTCCTCCTTTTAAgttg              >  2:734786/1‑141 (MQ=35)                     cTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTTCCTCCTTTTAAGTTGTTTa          <  2:340597/141‑1 (MQ=37)                        gTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTTCCTCCTTTTAAGTTGTTTATGt       <  1:304217/141‑1 (MQ=39)                             cTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTTCCTCCTTTTAAGTTGTTTATGTCCAtt  >  1:552850/1‑141 (MQ=255)                                 |                                                                                                                                         TTATCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTGTTCCTCCTTTTAAGTTGTTTATGTCCATT  >  CP000730/1601459‑1601627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.