| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 37410 = | 40 (1.170) | 4 (0.120) | 4/262 | 4.9 | 9.2% | intergenic (+106/‑403) | USA300HOU_0028/ugpQ1 | hypothetical protein/glycerophosphodiester phosphodiesterase |
| ? | CP000730 | 37432 = | 41 (1.260) | intergenic (+128/‑381) | USA300HOU_0028/ugpQ1 | hypothetical protein/glycerophosphodiester phosphodiesterase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATCAGCAATTTTACTGAGAACTGCTTTTAACGCACCTCTTATCTGCAATTTTGCCTAGAACTGCTTTTAACGTACCTCTTATCTGCAATTTTACTGAGAACTGCTTTTAACTTACCCCTTATCAGCAATTTTGCATGGAATTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/37555‑37410‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aattgctGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTGCTGATAAGGG > CP000730/37432‑37559 TATCAGCAATTTTACTGAGAACTGCTTTTAACGCACCTCTTATCTGCAATTTTGCCTAGAACTGCTTTTAACGTACCTCTTATCTGCAATTTTACTGAGAACTGCTTTTAACTTACCCCTTATCAGCAATTTTGCATGGAA > 2:252842/1‑141 GCAATTTTACTGAGAACTGCTTTTAACGCACCTCTTATCTGCAATTTTGCCTAGAACTGCTTTTAACGTACCTCTTATCTGCAATTTTACTGAGAACTGCTTTTAACTTACCCCTTATCAGCAATTTTGCATGGAATTGCT > 1:107043/1‑141 GCTTTTAACGTACCTCTTATCTGCAATTTTACTGAGAACTGCTTTTAACTTACCCCTTATCAGCAATTTTGCATGGAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAA > 2:189745/1‑141 TTACTGAGAACTGCTTTTAACTTACCCCTTATCAGCAATTTTGCATGGA > 1:9170/1‑49 TTACTGAGAACTGCTTTTAACTTACCCCTTATCAGCAATTTTGCATGGA < 2:9170/49‑1 TGCTTTTAACTTACCCCTTATCAGCAATTTTGCATGGAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAA < 1:189745/141‑1 TTGCATGGAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTGCTGATAAG > 2:10741/1‑141 GCATGGAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTGCTGATAAGGG > 1:368928/1‑141 TATCAGCAATTTTACTGAGAACTGCTTTTAACGCACCTCTTATCTGCAATTTTGCCTAGAACTGCTTTTAACGTACCTCTTATCTGCAATTTTACTGAGAACTGCTTTTAACTTACCCCTTATCAGCAATTTTGCATGGAATTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/37555‑37410‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aattgctGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTGCTGATAAGGG > CP000730/37432‑37559 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |