New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	37410 =	40 (1.170)	4 (0.120)	4/262	4.9	9.2%	intergenic (+106/‑403)	USA300HOU_0028/ugpQ1	hypothetical protein/glycerophosphodiester phosphodiesterase
	?	CP000730	37432 =	41 (1.260)					intergenic (+128/‑381)	USA300HOU_0028/ugpQ1	hypothetical protein/glycerophosphodiester phosphodiesterase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTGC  >  CP000730/37280‑37550                                                                                                                                   |                                                                                                                                             gTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCAt                                                                                                                                    >  1:231294/1‑141 (MQ=255)  tttGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATg                                                                                                                                   <  1:110884/141‑1 (MQ=255)   ttGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGc                                                                                                                                  <  2:112807/141‑1 (MQ=255)      ttAAAAGCAGTTCGCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCaaa                                                                                                                               <  2:309394/141‑1 (MQ=255)           aGCATTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGc                                                                                                                          <  1:263993/141‑1 (MQ=255)             cAGTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTg                                                                                                                        <  1:91805/141‑1 (MQ=255)              aGTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGa                                                                                                                       >  1:41833/1‑141 (MQ=255)               gTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGAt                                                                                                                      <  1:253696/141‑1 (MQ=255)               gTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGAt                                                                                                                      >  1:109449/1‑141 (MQ=255)               gTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGAt                                                                                                                      >  1:59452/1‑141 (MQ=255)                     aGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAgggg                                                                                                                <  1:39720/141‑1 (MQ=255)                       tAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCTAAGCAAAATTGCTGATAAGGGGTa                                                                                                              >  2:335001/1‑141 (MQ=255)                        aaaaTTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTaa                                                                                                             >  1:347501/1‑141 (MQ=255)                            atACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTa                                                                                                         <  1:372521/140‑1 (MQ=255)                              aCAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCTATGCAAAATTGCTGATAAGGGGTAAGTTaaa                                                                                                       >  2:55184/1‑141 (MQ=255)                              aCAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGTAAAATTGCTGATAAGGGGTAAGTTaaa                                                                                                       >  2:21362/1‑141 (MQ=255)                                aGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAg                                                                                                     <  2:221478/141‑1 (MQ=255)                                     agagGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGtt                                                                                                >  1:197522/1‑141 (MQ=255)                                         gTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGGGGTTAGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCa                                                                                            <  2:279706/141‑1 (MQ=255)                                               tAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTaaaa                                                                                      >  1:324680/1‑141 (MQ=255)                                                aaaaGCAGTTCTGAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAAt                                                                                     >  2:135923/1‑141 (MQ=255)                                                aaaaGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAAt                                                                                     >  1:354167/1‑141 (MQ=255)                                                  aaGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTg                                                                                   >  2:201385/1‑141 (MQ=255)                                                   aGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGc                                                                                  >  2:230319/1‑141 (MQ=255)                                                       gTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCAGATAAGGGGTAAGTTAAAAGCAGTTCTAAGTAAAATTGCAGAt                                                                              >  2:204107/1‑141 (MQ=255)                                                          cTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAag                                                                           <  1:44014/141‑1 (MQ=255)                                                             aGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAgg                                                                        <  2:105742/141‑1 (MQ=255)                                                             aGTAAAAGTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCAGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAgg                                                                        <  2:325149/141‑1 (MQ=255)                                                              gTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTTAGTAAAATTGCAGATAAGAGGt                                                                       <  2:363199/141‑1 (MQ=255)                                                               tAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTa                                                                      >  1:91853/1‑141 (MQ=255)                                                                        aGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGTAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAg                                                             <  2:144641/141‑1 (MQ=255)                                                                        aGATAAGAGGTTTGTTAAAAGAAGATCTAAGTAAAAATGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGAGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAg                                                             <  2:334181/141‑1 (MQ=255)                                                                                  tttGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAgg                                                   <  1:252207/141‑1 (MQ=255)                                                                                       tAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCaaaa                                              >  1:62552/1‑141 (MQ=255)                                                                                           aGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGc                                          <  1:175058/141‑1 (MQ=255)                                                                                               gTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGCTAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGTAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGAt                                      >  1:63279/1‑141 (MQ=255)                                                                                                 tCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATaa                                    >  1:333447/1‑141 (MQ=255)                                                                                                     aGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATaaaaaa                                <  2:72217/141‑5 (MQ=255)                                                                                                                                  aaGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTg   >  2:196163/1‑141 (MQ=255)                                                                                                                                  aaGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTg   <  1:3558/141‑1 (MQ=255)                                                                                                                                   aGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTGc  <  1:107043/141‑1 (MQ=255)                                                                                                                                   |                                                                                                                                             GTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTGC  >  CP000730/37280‑37550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.