New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	37410 =	40 (1.170)	4 (0.120)	4/262	4.9	9.2%	intergenic (+106/‑403)	USA300HOU_0028/ugpQ1	hypothetical protein/glycerophosphodiester phosphodiesterase
	?	CP000730	37432 =	41 (1.260)					intergenic (+128/‑381)	USA300HOU_0028/ugpQ1	hypothetical protein/glycerophosphodiester phosphodiesterase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTGCTGATAAGGGGTAAG  >  CP000730/37292‑37564                                                                                                                                             |                                                                                                                                     cAGTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTg                                                                                                                                      <  1:91805/141‑1 (MQ=255)  aGTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGa                                                                                                                                     >  1:41833/1‑141 (MQ=255)   gTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGAt                                                                                                                                    >  1:59452/1‑141 (MQ=255)   gTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGAt                                                                                                                                    >  1:109449/1‑141 (MQ=255)   gTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGAt                                                                                                                                    <  1:253696/141‑1 (MQ=255)         aGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAgggg                                                                                                                              <  1:39720/141‑1 (MQ=255)           tAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCTAAGCAAAATTGCTGATAAGGGGTa                                                                                                                            >  2:335001/1‑141 (MQ=255)            aaaaTTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTaa                                                                                                                           >  1:347501/1‑141 (MQ=255)                atACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTa                                                                                                                       <  1:372521/140‑1 (MQ=255)                  aCAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCTATGCAAAATTGCTGATAAGGGGTAAGTTaaa                                                                                                                     >  2:55184/1‑141 (MQ=255)                  aCAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGTAAAATTGCTGATAAGGGGTAAGTTaaa                                                                                                                     >  2:21362/1‑141 (MQ=255)                    aGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAg                                                                                                                   <  2:221478/141‑1 (MQ=255)                         agagGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGtt                                                                                                              >  1:197522/1‑141 (MQ=255)                             gTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGGGGTTAGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCa                                                                                                          <  2:279706/141‑1 (MQ=255)                                   tAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTaaaa                                                                                                    >  1:324680/1‑141 (MQ=255)                                    aaaaGCAGTTCTGAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAAt                                                                                                   >  2:135923/1‑141 (MQ=255)                                    aaaaGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAAt                                                                                                   >  1:354167/1‑141 (MQ=255)                                      aaGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTg                                                                                                 >  2:201385/1‑141 (MQ=255)                                       aGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGc                                                                                                >  2:230319/1‑141 (MQ=255)                                           gTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCAGATAAGGGGTAAGTTAAAAGCAGTTCTAAGTAAAATTGCAGAt                                                                                            >  2:204107/1‑141 (MQ=255)                                              cTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAag                                                                                         <  1:44014/141‑1 (MQ=255)                                                 aGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAgg                                                                                      <  2:105742/141‑1 (MQ=255)                                                 aGTAAAAGTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCAGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAgg                                                                                      <  2:325149/141‑1 (MQ=255)                                                  gTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTTAGTAAAATTGCAGATAAGAGGt                                                                                     <  2:363199/141‑1 (MQ=255)                                                   tAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTa                                                                                    >  1:91853/1‑141 (MQ=255)                                                            aGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGTAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAg                                                                           <  2:144641/141‑1 (MQ=255)                                                            aGATAAGAGGTTTGTTAAAAGAAGATCTAAGTAAAAATGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGAGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAg                                                                           <  2:334181/141‑1 (MQ=255)                                                                      tttGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAgg                                                                 <  1:252207/141‑1 (MQ=255)                                                                           tAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCaaaa                                                            >  1:62552/1‑141 (MQ=255)                                                                               aGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGc                                                        <  1:175058/141‑1 (MQ=255)                                                                                   gTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGCTAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGTAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGAt                                                    >  1:63279/1‑141 (MQ=255)                                                                                     tCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATaa                                                  >  1:333447/1‑141 (MQ=255)                                                                                         aGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATaaaaaa                                              <  2:72217/141‑5 (MQ=255)                                                                                                                      aaGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTg                 <  1:3558/141‑1 (MQ=255)                                                                                                                      aaGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTg                 >  2:196163/1‑141 (MQ=255)                                                                                                                       aGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTGc                <  1:107043/141‑1 (MQ=255)                                                                                                                            ttCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTGCTGATa           <  2:252842/141‑1 (MQ=255)                                                                                                                             tCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTaa                                                                                                      >  2:9170/1‑49 (MQ=255)                                                                                                                             tCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTaa                                                                                                      <  1:9170/49‑1 (MQ=255)                                                                                                                              ttgcatggaaTTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTGCTGATAAg         >  2:10741/9‑141 (MQ=255)                                                                                                                                gcatggaaTTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTGCTGATAAggg       >  1:368928/7‑141 (MQ=255)                                                                                                                                  gCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTGCTGATAAGGGGt     <  2:55050/141‑1 (MQ=255)                                                                                                                                     aaaTTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGTAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTGCTGATAAGGGGTAAg  >  1:307514/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                     CAGTTCTCAGTAAAATTACAGATAAGAGGTACGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTAAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAATTCCATGCAAAATTGCTGATAAGGGGTAAGTTAAAAGCAGTTCTCAGTAAAATTGCAGATAAGAGGTACGTTAAAAGCAGTTCTAGGCAAAATTGCAGATAAGAGGTGCGTTAAAAGCAGTTCTCAGTAAAATTGCTGATAAGGGGTAAG  >  CP000730/37292‑37564

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.