New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 244005235 (1.020)5 (0.160) 5/252 4.2 12.7% intergenic (+13/+53) USA300HOU_2302/glvC hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC
?CP000730 = 2440086 37 (1.180)intergenic (+47/+19) USA300HOU_2302/glvC hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAATAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2439904‑2440052
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagacacatcACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTGGCAGATAGAATGTCGATATTTCTAGTTGCAATCGTATGTAACA  <  CP000730/2440086‑2439954
                                                                                                                                                                                                                                                                                          
GAATAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAA                                                                                                                                               >  2:162850/1‑141
                                      TATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACAT‑‑CTATACGCAATCATTGTAAATGATCATCGTA                                                                                                       <  2:102868/141‑1
                                           GCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAG                                                                                                    <  2:42784/141‑1
                                            CTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGA                                                                                                   <  2:188341/141‑1
                                                 TTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGT                                                                                              <  2:186804/141‑1
                                                       CATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTA                                                                                        <  1:354667/141‑1
                                                                                                                                         AAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTGGCAGATAGAATGTCGATATTTCTAGTTGCAATCGTATGT      <  2:47738/141‑1
                                                                                                                                         AAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTGGCAGATAGAATGTCGATATTTCTAGTTGCAATCGTATGT      >  1:276617/1‑141
                                                                                                                                             GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTGGCAGATAGAATGTCGATATTTCTAGTTGCAATCGTATGTAACA  <  1:89142/141‑1
                                                                                                                                               CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTGGCAGATAGAATGTCGATAT                          >  2:226009/1‑115
                                                                                                                                               CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTGGCAGATAGAATGTCGATAT                          <  1:226009/115‑1
                                                                                                                                                                                                                                                                                          
GAATAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2439904‑2440052
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagacacatcACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTGGCAGATAGAATGTCGATATTTCTAGTTGCAATCGTATGTAACA  <  CP000730/2440086‑2439954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.