New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 244005235 (1.020)5 (0.160) 5/252 4.2 12.7% intergenic (+13/+53) USA300HOU_2302/glvC hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC
?CP000730 = 2440086 37 (1.180)intergenic (+47/+19) USA300HOU_2302/glvC hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCA  >  CP000730/2439954‑2440223
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tGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTc                                                                                                                                    >  1:89142/1‑141 (MQ=255)
    aCATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCtttt                                                                                                                                <  1:276617/141‑1 (MQ=255)
    aCATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCtttt                                                                                                                                >  2:47738/1‑141 (MQ=255)
           aTTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtat                                                                                                                         <  1:11165/141‑1 (MQ=255)
             tGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtatta                                                                                                                       <  1:72563/141‑1 (MQ=255)
                aaCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattt                                                                                                                   >  2:226276/1‑141 (MQ=255)
                        atatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGAtgtg                                                                                                                                      >  1:226009/1‑115 (MQ=255)
                        atatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGAtgtg                                                                                                                                      <  2:226009/115‑1 (MQ=255)
                                    tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCt                                                                                               <  1:271965/141‑1 (MQ=255)
                                      tCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa                                                                                             >  1:35648/1‑141 (MQ=255)
                                             aTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAttt                                                                                      <  1:280014/141‑1 (MQ=255)
                                             aTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAttt                                                                                      >  1:129922/1‑141 (MQ=255)
                                              ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTg                                                                                     <  2:121727/141‑1 (MQ=255)
                                                          aTCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTc                                                                         >  1:5479/1‑141 (MQ=255)
                                                            cTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCAc                                                                       <  1:180411/141‑1 (MQ=255)
                                                            cTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCAc                                                                       <  2:361720/141‑1 (MQ=255)
                                                                 aGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACt                                                                  <  1:310145/141‑1 (MQ=255)
                                                                         tCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTAc                                                          >  2:138729/1‑141 (MQ=255)
                                                                         tCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTAc                                                          <  2:279273/141‑1 (MQ=255)
                                                                           gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTg                                                        >  1:19217/1‑141 (MQ=255)
                                                                            tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTg                                                        <  2:78750/141‑1 (MQ=255)
                                                                             atatCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTTTTTTTTTTTTCTTCGGACGATTGATCTTCAACCATTTGTTCTAATGCTTCACGAACTTGTGGTACTGTc                                                      >  2:136717/1‑141 (MQ=255)
                                                                             atatCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATTCTTCACTAACTTGTGGTACTGTc                                                      >  2:258515/1‑141 (MQ=255)
                                                                                 cATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAc                                                  <  2:240075/141‑1 (MQ=255)
                                                                                  ataataAAAGACACATCTATACGATGATCATTTACAATGATTGCGTACAGTGCTGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAcc                                                 <  1:314107/141‑1 (MQ=255)
                                                                                   taataaAAGACACATCTATACGATGATCATTTATAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACct                                                <  2:280691/141‑1 (MQ=255)
                                                                                      taaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctact                                             <  2:120738/141‑1 (MQ=255)
                                                                                         aaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTTTTTTTTTTATCTTCGGACGATTGATCCTCAACCATTTTTTCTAATGCTTCACGAACTTGTTGTACTCTCCTACCTCCTACa                                          >  2:251607/1‑141 (MQ=255)
                                                                                         aaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCt                                                                                               <  2:33416/88‑1 (MQ=255)
                                                                                         aaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCt                                                                                               >  1:33416/1‑88 (MQ=255)
                                                                                                aTCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTTTTTTTTTTTTCTTCGGACGATTGATCCTCAACCATTTGTTCATTTGTTTTACGAACTTTTGGTACTGTCCTACCTACTATAATTTGGa                                   >  2:319950/1‑141 (MQ=255)
                                                                                                       cGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCtt                            <  2:242581/141‑1 (MQ=255)
                                                                                                         atgatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTTTATTTTTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTAc                          >  2:170963/1‑141 (MQ=255)
                                                                                                             tcattgtaaaTGATTGCGTATAGTGATGTGTCTTTTTTTTTTTTTTTTTTATTCGTACGATTGATACTTAACCTTTTGTTTTTTTGCTTGTCGAACTTGTGGTTCTGTTCTACCTCTTAACGCATGGATACTCTTACCAct                      >  2:339662/9‑141 (MQ=255)
                                                                                                              cATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCAcgt                     >  1:276220/1‑139 (MQ=255)
                                                                                                                 ttACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCttt                  >  2:347291/1‑141 (MQ=255)
                                                                                                                    cAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACt               <  2:190448/141‑1 (MQ=255)
                                                                                                                         aTTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATcc          >  1:206556/1‑141 (MQ=255)
                                                                                                                         aTTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATcc          >  1:165723/1‑141 (MQ=255)
                                                                                                                              gTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGtgtg     <  1:52255/141‑1 (MQ=255)
                                                                                                                              gTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGtgtg     <  1:36791/141‑1 (MQ=255)
                                                                                                                                 taGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCa  <  2:116725/141‑1 (MQ=255)
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TGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCA  >  CP000730/2439954‑2440223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.