| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2440052 | 35 (1.020) | 5 (0.160) | 5/252 | 4.2 | 12.7% | intergenic (+13/+53) | USA300HOU_2302/glvC | hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC |
| ? | CP000730 | = 2440086 | 37 (1.180) | intergenic (+47/+19) | USA300HOU_2302/glvC | hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGA > CP000730/2439924‑2440190 | ttatATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATc > 2:280014/1‑141 (MQ=255) gTACGCCAGAAATATTGGCTAAAGTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCGAATTATAGATCGTCGTCTATGAGCAAGGCGCGGAGATCGTGATAAAAGACACATCTGTACGATGATCATGTAc < 2:321401/141‑1 (MQ=255) aaTATTTGCTAAATTGTAACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCg < 2:240959/141‑1 (MQ=255) tttGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGtata > 1:190448/1‑141 (MQ=255) tGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTc > 1:89142/1‑141 (MQ=255) aCATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCtttt > 2:47738/1‑141 (MQ=255) aCATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCtttt < 1:276617/141‑1 (MQ=255) aTTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtat < 1:11165/141‑1 (MQ=255) tGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtatta < 1:72563/141‑1 (MQ=255) aaCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAtta‑ttt > 2:226276/1‑141 (MQ=255) atatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGAtgtg > 1:226009/1‑115 (MQ=255) atatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGAtgtg < 2:226009/115‑1 (MQ=255) tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCt < 1:271965/141‑1 (MQ=255) tCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCa > 1:35648/1‑141 (MQ=255) aTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCAttt > 1:129922/1‑141 (MQ=255) aTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCAttt < 1:280014/141‑1 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTg < 2:121727/141‑1 (MQ=255) aTCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTc > 1:5479/1‑141 (MQ=255) cTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCAc < 1:180411/141‑1 (MQ=255) cTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCAc < 2:361720/141‑1 (MQ=255) aGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACt < 1:310145/141‑1 (MQ=255) tCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTAc > 2:138729/1‑141 (MQ=255) tCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTAc < 2:279273/141‑1 (MQ=255) gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTg > 1:19217/1‑141 (MQ=255) tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTg < 2:78750/141‑1 (MQ=255) atatCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTTTTTTT‑TTTTTCTTCGGACGATTGATCTTCAACCATTTGTTCTAATGCTTCACGAACTTGTGGTACTGTc > 2:136717/1‑141 (MQ=255) atatCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATTCTTCACTAACTTGTGGTACTGTc > 2:258515/1‑141 (MQ=255) cATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAc < 2:240075/141‑1 (MQ=255) ataataAAAGACACATCTATACGATGATCATTTACAATGATTGCGTACAGTGCTGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAcc < 1:314107/141‑1 (MQ=255) taataaAAGACACATCTATACGATGATCATTTATAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACct < 2:280691/141‑1 (MQ=255) taaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctact < 2:120738/141‑1 (MQ=255) aaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTTTTTTT‑TTTATCTTCGGACGATTGATCCTCAACCATTTTTTCTAATGCTTCACGAACTTGTTGTACTCTCCTACCTCCTACa > 2:251607/1‑141 (MQ=255) aaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCt > 1:33416/1‑88 (MQ=255) aaGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCt < 2:33416/88‑1 (MQ=255) aTCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTTTTTTT‑TTTTTCTTCGGACGATTGATCCTCAACCATTTGTTCATTTGTTTTACGAACTTTTGGTACTGTCCTACCTACTATAATTTGGa > 2:319950/1‑141 (MQ=255) | TTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTA‑TTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGA > CP000730/2439924‑2440190 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |