New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 539419	35 (1.020)	5 (0.150)	4/262	4.9	13.1%	coding (1730/3507 nt)	mfd	transcription‑repair coupling factor helicase
	?	CP000730	= 539422	33 (1.020)					coding (1733/3507 nt)	mfd	transcription‑repair coupling factor helicase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAAAGGTACGGATCAACTATTTGTTCCAGTAGATCAAATGGATCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAAAGAAAGAGAAATGGCAGAAGGTTATCAATATGGGGAAGACACAGCTGAGCAAACAACATTTGAATTAGATTTTCCATATGAACTTACGCCTGACCAAG  >  CP000730/539281‑539559                                                                                                                                           |                                                                                                                                             ataAAGGTACGGATCAACTATTTGTGCCAGTGGATCAAATGGATCGAGTTCGAAAATAGGTAGCTGCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGGTCAACaaa                                                                                                                                            >  2:371647/1‑141 (MQ=255)   aaaGGTACGGATCAACTATTTGTTCCAGTAGATCAAATGGATCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAgt                                                                                                                                          <  1:61488/141‑1 (MQ=255)    aaGGTACGGATCAACTATTTGTTCCAGTAGATCAAATGGATCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTcaacactttg                                                                                                                                         <  1:270752/141‑6 (MQ=255)         aCGGATCAACTATTTGTTCCAGTAGATCAAATGGATCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGaa                                                                                                                                    <  1:265933/141‑1 (MQ=255)            gATCAACTATTTGTTCCAGTAGATCAAATGGATCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGat                                                                                                                                 >  1:326605/1‑141 (MQ=255)             aTCAACTATTTGTTCCAGTAGATCAAATGGATCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGata                                                                                                                                >  1:149619/1‑141 (MQ=255)              tCAACTATTTGTTCCAGTAGATCAAATGGATCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGatat                                                                                                                               >  1:67562/1‑141 (MQ=255)                       tGTTCCAGTAGATCAAATGGATCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAaga                                                                                                                      >  1:78869/1‑141 (MQ=255)                          tCCAGTAGATCAAATGGATCAAGTTCAAAAATATGTAGCTTAGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGACAAAAACAAAAGCTAAAGTTCAACAAAGTGTTAAAGATATTgaagacgagat                                                                                                                   >  2:69602/1‑131 (MQ=255)                          tCCAGTAGATCAAATGGATCAAGGTCAAAACTATGTAGCTTCGGAAGATAAGCCGCCAAAATTAAATAAAATCGGCGGCAGGGAATGGAAAAAGACAAAAGCAACAGTTCAACAAAGAGTCGAAGAACTTGCTGAAGAGtc                                                                                                                   >  2:238125/1‑140 (MQ=255)                            cAGTAGATCAAATGGATCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTcaacactttg                                                                                                                                         <  1:159778/117‑6 (MQ=255)                            cAGTAGATCAAATGGATCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTcaacactttg                                                                                                                                         >  2:159778/1‑112 (MQ=255)                                  aTCAAATGGATCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTgattgatt                                                                                                           >  2:246751/1‑141 (MQ=255)                                     aaaTGGATCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTtat                                                                                                        >  2:59076/1‑141 (MQ=255)                                     aaaTGGATCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAATTGATTGATTtat                                                                                                        >  2:262039/1‑141 (MQ=255)                                       aTGGATCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTtatat                                                                                                      >  2:180326/1‑141 (MQ=255)                                            tCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATaaaga                                                                                                 >  2:236375/1‑141 (MQ=255)                                            tCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATaaaga                                                                                                 <  1:349421/141‑1 (MQ=255)                                               aGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATaaagaaag                                                                                              >  1:72224/1‑141 (MQ=255)                                                gTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAaagaaaga                                                                                             >  1:1604/1‑141 (MQ=255)                                                          atGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAAAGAAAGAGAAATGGCAg                                                                                   >  1:189675/1‑141 (MQ=255)                                                             tAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAAAGAAAGAGAAATGGCAGAAg                                                                                >  1:296637/1‑141 (MQ=255)                                                                          tAAGCCGCCAAAATTAAATAAACTCGGTGGTAGTGAATGGGAACAAAGAAAAGCAAAAGTTCAACAAAGTGTTGAAGATATTGCTGCAGAGATGATTGAATTAAAGAAAGAAAGAGAAATGGCAGAAGGGTATCACTATgg                                                                   >  2:31788/1‑141 (MQ=255)                                                                            aGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAAAGAAAGAGAAATGGCAGAAGGTTATCAATATgggg                                                                 >  2:18176/1‑141 (MQ=255)                                                                              aCGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAAAGAAAGAGAAATGGCAGAAGGTTATCAATATGGGGaa                                                               >  2:206345/1‑141 (MQ=255)                                                                               cGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAAAGAAAGAGAAATGGCAGAAGGTTATCAATATGGGGAAg                                                              >  1:51094/1‑141 (MQ=255)                                                                                         aaataaaCTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTAGATAAAGAAAGAGAAATGGCAGAAGGGTATCAATATGGGGAAGACACAGCTGa                                                    >  1:164559/1‑141 (MQ=255)                                                                                             aaaCTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAAAGAAAGAGAAATGGCAGAAGGTTATCAATATGGGGAAGACACAGCTGAGCaa                                                >  2:136269/1‑141 (MQ=255)                                                                                             aaaCTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAAAGAAAGAGAAATGGCAGAAGGTTATCAATATGGGGAAGACACAGCTGAGCaa                                                <  2:135893/141‑1 (MQ=255)                                                                                                   ggTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTTCGGTAGAGTTTATTTAATAATATAAAGAAAGAGGAAGGGCGGAGGTGTATGAATATGGGGAAGACACAGGTTGGCAAacaaca                                          >  1:371511/1‑141 (MQ=255)                                                                                                        taGTAAACGGAAAAAAACAAAAGCTAAAGTAGAACAAAGTGAAGAAGATATTGATGAAGAGTTAATTGAGTTATACAAAGAAAGAGAGATGGCAGAAGGTTATCAAGATGGGAAATACACAGCTCAGCCAACAACAGTTGa                                     <  2:160891/140‑1 (MQ=255)                                                                                                            gAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAAAGAAAGAGAAATGGCAGAAGGTTATCAATATGGGGAAGACACAGCTGAGCAAACAACATTTGAATTa                                 <  1:105592/141‑1 (MQ=255)                                                                                                              aTGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTAGATAAAGAAAGAGAAATGGCAGAAGGTTATCAATATGGGGAAGACACAGCTGAGCAAACAACATTTGAATTAGa                               >  1:72151/1‑141 (MQ=255)                                                                                                                  aaaaaaaCAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAAAGAAAGAGAAATGGCAGAAGGTTATCAATATGGGGAAGACACAGCTGAGCAAACAACATTTGAATTAGAtttt                           <  1:234600/141‑1 (MQ=255)                                                                                                                         cAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAAAGAAAGAGAAATGGCAGAAGGTTATCAATATGGGGAAGACACAGCTGAGCAAACAACATTTGAATTAGATTTTCCATATg                    <  2:149619/141‑1 (MQ=255)                                                                                                                            aaGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAAAGAAAGAGAAATGGCAGAAGGTTATCAATATGGGGAAGACACAGCTGAGCAAACAACATTTGAATTAGATTTTCCATATGAAc                 <  2:114305/141‑1 (MQ=255)                                                                                                                                   aGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAAAGAAAGAGAAATGGCAGAAGGTTATCAATATGGGGAAGACACAGCTGAGCAAACAACATTTGAATTAGATTTTCCATATGAACTTACGcc          <  2:51094/141‑1 (MQ=255)                                                                                                                                           aaaGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAAAGAAAGAGAAATGGCAGAAGGTTATCAATATGGGGAAGACACAGCTGAGCAAACAACATTTGAATTAGATTTTCCATATGAACTTACGCCTGACCAAg  <  2:159367/141‑1 (MQ=255)                                                                                                                                           |                                                                                                                                             ATAAAGGTACGGATCAACTATTTGTTCCAGTAGATCAAATGGATCAAGTTCAAAAATATGTAGCTTCGGAAGATAAGACGCCAAAATTAAATAAACTCGGTGGCAGTGAATGGAAAAAAACAAAAGCTAAAGTTCAACAAAGTGTTGAAGATATTGCTGAAGAGTTGATTGATTTATATAAAGAAAGAGAAATGGCAGAAGGTTATCAATATGGGGAAGACACAGCTGAGCAAACAACATTTGAATTAGATTTTCCATATGAACTTACGCCTGACCAAG  >  CP000730/539281‑539559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.