BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	52495 =	148 (0.860)	181 (1.060) +T	5/294	13.4	55.5%	intergenic (+105/‑568)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
*	?	CP000730	= 52988	144 (0.840)	181 (1.060) +T	5/294	13.4	55.5%	intergenic (+598/‑75)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 144 total aligned reads displayed.

AATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACGT  >  CP000730/52842‑53135

gaTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATGTCGTGAAATCATCGTAGTAATCGCGCGAAAATcgc                                                                                                                                                   <  1:836078/148‑1 (MQ=255)

 aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgcg                                                                                                                                                  <  2:1446055/149‑1 (MQ=32)

    gTTTGAAATCAACGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGa                                                                                                                                               <  2:413841/149‑1 (MQ=17)

          aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACt                                                                                                                                         >  1:89928/1‑149 (MQ=34)

          aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGAGAAATAcg                                                                                                                                         >  1:13202/1‑148 (MQ=18)

          aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGGGGGATCGTTTGAAATCATTGTAGGAATCGTGCGAAAATCGCGTGAAATAca                                                                                                                                         >  2:1339228/1‑148 (MQ=11)

          aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATAATCGGTGTAATCGCGCGAAAATCGCGTGAAATACTCAGAGGAATCGTTTGAAAGCATCGTAGTAATCGCGCGAAAATCGCGTGAAATaga                                                                                                                                         >  2:620259/1‑147 (MQ=11)

               tcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGt                                                                                                                                    <  1:1319773/149‑1 (MQ=38)

               tcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGAGAAAATGGCGTGCAATAGTATGGt                                                                                                                                    >  1:981432/1‑149 (MQ=255)

                     taATCGCGCGAAAATCGCGTGAAATAATCCGGGAGATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATGCTATGGTAGCCgg                                                                                                                              >  1:413298/1‑149 (MQ=14)

                     taATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGGGGGATCGTTTGAAATCATCGTAGGAATCTCGCGAAAATCGCGTGAAATACAATCGTAGACga                                                                                                                              >  2:509727/1‑148 (MQ=11)

                     taATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGAGGAATCGTTTGAAATCATCGTAGTAATCGTGCGAAAATCGCGGGAAGTAGTATgagagaagg                                                                                                                              >  2:168707/1‑141 (MQ=11)

                       aacgcccgAAAAACACGTGAAATAATCACAGGACCCCTTTCAGACCAGCTTAGCAAGCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGAGTGATCTACTATGGTAGAAGGtt                                                                                                                            <  2:1643366/147‑1 (MQ=11)

                       aTCGCCCGAAAACCTCCTGAAATAATCATAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGtt                                                                                                                            <  1:1065258/149‑1 (MQ=14)

                        tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAAACATCGTAGTAATCGCGCGAAAATCACGGGAAATACGATGGTAGACggata                                                                                                                           >  2:1384628/1‑146 (MQ=14)

                         cgcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCGGAGGAATCGTGTGAAATCATCGTAGTAATCGCGCGAAAAGCGCGTGAAAGACTAGGGTAGTCGGTTTg                                                                                                                          >  1:582605/1‑149 (MQ=14)

                          gggcgAAAGCCGCGGGAAATAATCAGAGGAGTCGTTTGAAATCATCGTAGGAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGa                                                                                                                         <  1:1590378/147‑1 (MQ=14)

                          gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGa                                                                                                                         <  1:448277/149‑1 (MQ=255)

                          gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGa                                                                                                                         <  1:457495/149‑1 (MQ=255)

                          gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGa                                                                                                                         <  1:1395715/149‑1 (MQ=255)

                          gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGa                                                                                                                         <  1:614653/149‑1 (MQ=255)

                          gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGa                                                                                                                         <  1:1374937/149‑1 (MQ=255)

                          gcgcgAAAATCGCCTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGa                                                                                                                         <  1:536670/149‑1 (MQ=255)

                          gcgcgAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGa                                                                                                                         <  2:815703/149‑1 (MQ=255)

                           cgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGGATCGTTTGAAATCATCGTAGTAGTCGCGCGAAAATCGCGTGAAATACTATGGTCGACGGGTTGAg                                                                                                                        >  2:933055/1‑149 (MQ=255)

                            gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATGGTTTGAAAACATCGTTGGAATCGCGTAAAAGTCGCGTGAAATAGTATAGTAGAAGATTagaga                                                                                                                       >  2:798813/1‑148 (MQ=11)

                            gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGGAATCGCGTGAAAATGGCGTGTAATAAGATGGTAGACGGATTGAga                                                                                                                       >  2:1073647/1‑148 (MQ=14)

                              gAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaa                                                                                                                     <  1:1601862/149‑1 (MQ=255)

                              gAAAATCGCGGGAAATAAGCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGGAATCATGGACGTCGTCTCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaa                                                                                                                     <  1:829962/149‑1 (MQ=17)

                              aaaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaa                                                                                                                     <  1:1624346/148‑1 (MQ=255)

                                   tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGAGCGAAAATCGCGTGAAATACAATGTTAGACGGGTTGAGTAGATTaa                                                                                                                >  1:1281536/1‑149 (MQ=14)

                                     ccgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATg                                                                                                              <  1:1645027/148‑1 (MQ=255)

                                      cgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATgg                                                                                                             <  1:343207/149‑1 (MQ=255)

                                         gAAATAATCAGAGTAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAGTAAGGGGGATGGTTTGAGAAAAtcgaaggaat                                                                                                          >  2:1512408/1‑140 (MQ=11)

                                            ataataAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATAAATGGAgagtt                                                                                                       >  1:95927/1‑145 (MQ=255)

                                             taagCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAttt                                                                                                      <  1:586959/149‑1 (MQ=255)

                                              aatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAtttt                                                                                                     <  1:536071/149‑1 (MQ=255)

                                               atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGGAAATCGCGTGAAATAATCAGAGGAACCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTa                                                                                                    >  2:1219789/1‑149 (MQ=255)

                                                tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTaa                                                                                                   >  1:760968/1‑149 (MQ=255)

                                                  agagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGAGGAATCGTTTGAAATCATCGTAGTAGTCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAGTAAATGGAGAATGTTAata                                                                                                 >  2:1504566/1‑149 (MQ=17)

                                                    agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAc                                                                                                                                          <  1:92290/106‑1 (MQ=11)

                                                        aTCGTTTGAAATCATCGTAGTAATCGCGCGACAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATAATAGTCGTAATCGCGCGAAAATCGCGTGAAATACTATGGGCGACGGTTTGAGAGATTTAATAGAATAGTTGaaagacagtg                                                                                           >  2:429634/1‑141 (MQ=14)

                                                          cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGt                                                                                         >  1:253986/1‑149 (MQ=255)

                                                              tGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGGGCGAAAATCGGGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTgg                                                                                     <  1:1060041/149‑1 (MQ=255)

                                                                aaaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAACATCTATGGTTCggag                                                                                   >  1:1118043/1‑149 (MQ=255)

                                                                      tcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGGATTTTAATATATATGGTTAAGAGGAATTg                                                                             >  2:911184/1‑149 (MQ=255)

                                                                         tagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGt                                                                          >  1:1021684/1‑149 (MQ=255)

                                                                         tagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGt                                                                          >  2:1086175/1‑149 (MQ=255)

                                                                         tagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGGATTTTGATATTGATGGTTGGGAGGAATTGCgg                                                                          >  2:1169604/1‑148 (MQ=255)

                                                                          agtaATCGCGGGAAAATCGCCTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGtt                                                                         <  1:1504393/149‑1 (MQ=255)

                                                                          agtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGtt                                                                         <  1:261620/149‑1 (MQ=255)

                                                                          agtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGtt                                                                         <  1:1433022/149‑1 (MQ=255)

                                                                          agtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGtt                                                                         <  1:790174/149‑1 (MQ=255)

                                                                           gtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTg                                                                        <  1:1571390/149‑1 (MQ=255)

                                                                           gtaAGCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTg                                                                        <  1:285171/149‑1 (MQ=255)

                                                                            tttgctcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGACAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                       <  2:1278842/143‑1 (MQ=255)

                                                                             aaTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCa                                                                      <  1:303665/149‑1 (MQ=255)

                                                                               tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATa                                                                    >  1:882725/1‑149 (MQ=255)

                                                                               tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATa                                                                    >  1:335050/1‑149 (MQ=255)

                                                                               tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGGGAAATACTATGGTAGACGGTTTGAGTAAATTAAGGGAGTATTTTAGTATTTATGGTTTGGAGGAATTGAGTTGCATa                                                                    >  1:15994/1‑149 (MQ=255)

                                                                                        aaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAATATCTCGGTAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTTCGTTGCATAGAGAAAGTa                                                           <  1:1249805/149‑1 (MQ=37)

                                                                                        aaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTa                                                           <  1:253747/149‑1 (MQ=255)

                                                                                         attccgTGAAAGAATCCGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaa                                                          <  2:237346/145‑1 (MQ=255)

                                                                                         agcgcgTGAAATGATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGCAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaa                                                          <  1:1161254/147‑1 (MQ=255)

                                                                                         agcgcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGTGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaa                                                          <  1:1689891/147‑1 (MQ=255)

                                                                                          tCGCGGGAAATAAGCAGAGGAAGCGGTTGAAATCATCGTAGGAAGCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaaa                                                         <  2:95927/149‑1 (MQ=38)

                                                                                           cgcgcgAAATAATCAGAGGAATCGTTTGAAAGCATCTTATTAATCGCGAGACAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAat                                                        <  1:654242/149‑1 (MQ=38)

                                                                                             cgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAatat                                                      <  1:712004/149‑1 (MQ=255)

                                                                                             cgTGAAATAATCAGAAGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTGTGAGTAAATTAATGTAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAatat                                                      <  1:1014080/149‑1 (MQ=255)

                                                                                                     aatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGGGTTGCATGGAGAAAGTAAATATATagagga                                              >  1:190552/1‑147 (MQ=255)

                                                                                                     aatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGta                                              <  1:493436/149‑1 (MQ=255)

                                                                                                       tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGtata                                            >  2:707523/1‑149 (MQ=255)

                                                                                                       tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGtata                                            >  2:7460/1‑149 (MQ=255)

                                                                                                              aaTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATc                                     <  1:1236279/149‑1 (MQ=255)

                                                                                                              aaTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATc                                     <  2:1434348/149‑1 (MQ=255)

                                                                                                               aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATagag                                                >  1:713987/1‑137 (MQ=255)

                                                                                                               aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCa                                    <  1:480085/149‑1 (MQ=255)

                                                                                                                tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCAc                                   <  1:203926/149‑1 (MQ=255)

                                                                                                                    ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGaaa                               >  2:839645/1‑149 (MQ=255)

                                                                                                                       aaaTCAACGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTCGGAGGAATTGCGTTGCATAGAGACAGTTAAGATATAGAGTATAAGAAATCACGAAAAgg                            <  2:1222295/149‑1 (MQ=39)

                                                                                                                        aaTCTTCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGGAAATATATAGAGTATAAGAAATCACGAAAAGGa                           <  2:319162/149‑1 (MQ=255)

                                                                                                                        aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa                           <  1:1403281/149‑1 (MQ=255)

                                                                                                                        aaTCATCGTAGTAAGCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa                           <  2:888461/149‑1 (MQ=255)

                                                                                                                               gtagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGCGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTa                    >  1:223765/1‑149 (MQ=255)

                                                                                                                                  gtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATg                 >  2:850485/1‑149 (MQ=255)

                                                                                                                                  gtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATg                 >  2:518239/1‑149 (MQ=255)

                                                                                                                                  gtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAAGCACGAAAAGGATTATCTAATg                 >  1:41456/1‑149 (MQ=255)

                                                                                                                                     aTCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAACTCCCGAAAAGGACTACCtcagcctc              >  2:423774/1‑142 (MQ=255)

                                                                                                                                      tCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCCTAGAGAAAGTAAATATATAGCGTCTAAGAAGTTTCGAAAAAGATTATCCAAGGatat             >  1:389274/1‑149 (MQ=255)

                                                                                                                                       cgcgcgAAAATCGCGTGAAATACTATGGTAGACGGCTTGAGTAAATTAAGGGAGTATTTTAATATTTATGGTATGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGCATAAGAAATCACGACAAGGATTATCTAATGATAtt            >  2:1150496/1‑149 (MQ=255)

                                                                                                                                        gcgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTACGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATAttt           >  2:866046/1‑149 (MQ=255)

                                                                                                                                          gcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGAATATCTAATGATATTTgg         <  1:168707/149‑1 (MQ=255)

                                                                                                                                           cgAAAATCGCGGGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTCTAAGAAATCACGAAAAGGATTATCTAATGATATTTGGt        <  1:649886/149‑1 (MQ=255)

                                                                                                                                              aaaTCTCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGTAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTa     <  1:312147/149‑1 (MQ=255)

                                                                                                                                               aaTCTCGTGAAATATGATGGTAGACGGTTTGAGTAAATTAATGGAGGATTTTAATAGTTATGGTTTGGAGGAATTGCGTTTCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAATGATTATCTAATGATATTTGGTCTAc    <  1:429634/149‑1 (MQ=255)

                                                                                                                                               aaTCGCGTGAAATACTATGGTAGACGGTTTTAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTAc    <  2:1202849/149‑1 (MQ=255)

                                                                                                                                                aTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACg   <  1:1013044/149‑1 (MQ=255)

                                                                                                                                                aTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACg   <  1:304467/149‑1 (MQ=255)

                                                                                                                                                 tCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACGt  <  2:760548/149‑1 (MQ=255)

                                                                                                                                                 acgcgTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACGt  <  1:509727/148‑1 (MQ=255)

AATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACGT  >  CP000730/52842‑53135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.