| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2001402 | NA (NA) | 10 (0.080) +CTCCTACAGG |
7/274 | 7.7 | 60.5% | intergenic (‑11/+205) | rrl3/USA300HOU_t0051 | 23S ribosomal RNA/tRNA‑Ala |
| ? | CP000730 | 2001459 = | 7 (0.050) | intergenic (‑68/+148) | rrl3/USA300HOU_t0051 | 23S ribosomal RNA/tRNA‑Ala | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CTCATGCTGGGTTTCCCCATTCGGAAATCTCTGGATCAAAGCTTACTTACAGCTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2001257‑2001402‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATA > CP000730/2001459‑2001605 |||||||||| CTCATGCTGGGTTTCCCCATTCGGAAATCTCTGGATCAAAGCTTACTTACAGCTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTACTCTTTGTTTCCCT > 1:597358/1‑148CTCATGCTGGGTTTCCCCATTCGGAAATCTCTGGATCAAAGCTTACTTACAGCTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCCc > 1:587293/1‑147 TTACTTACCGCTCCCCAAAGCATATCGTCGTTAGTAACGCCTTACATCGGCTTCTAGTGCGAAGGCATCCACCGTGCGCCATTAATAACTTAATCTATGTTTCCCTCCTACAGGAAACGCGTTATTACTCTTGTGAGTGTTCTTTCGA < 2:551538/148‑1 ggtcgcAAGCATATCAGCGTGAGTAACGTGCTTAATCGGCTGCTAGAGCCAAGGCATCCACCGTGCGCACTTATTTACTTAAACTATGTTTCCCTCCTACAGGAAACGAGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGAT < 2:347311/142‑1 gcctacccTCGTTTGGAACGCCCTTCATCGTCTGTTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTGATCTATGTTTCCCTCCTACAGGAAACGCGTTATTACTCGTGAGAGTGTTCTTTCGAACACTAGCGATTATTTCTT < 2:998699/140‑1 GTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCCTCCTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTCTTTCTTATGAATTCAAGCTTATTTA > 1:982210/1‑148 CTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGGCACCGGTCTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATT > 1:743761/1‑148 cgcGCGCCCTTACTCACTTCATCTCAGTTCCCCTCCTCCAGGACACGCGTTATTAATCTTGTGCGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAA < 1:1349452/145‑1 CGTGCGCCCTTAATAACTTAATCTATGTTTCCCTCCTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAA < 1:1331721/148‑1 GCGGCCTTAATTACTTTATCTATGTTTCCTTCCTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCT < 2:434841/148‑1 ACTTAATCTATGTTTCCCTCCTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAATCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTA < 2:53176/148‑1 ttttcatgCTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACGAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTATATTCTATATTTTACTTCCTTATCTAGTTT > 2:933911/9‑148 TCCCTCCTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTC < 1:244055/148‑1 ccgTCCTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAAGACTAGCGATTATTTCTTATGAATTAAAGCTTATTTAAAACTCTTTGTTCACTCGGTTGTGCTTGGTAAAATCTATATTTTACTTACTTACCTAGTTTTCA > 2:361138/4‑148 CCTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGT < 1:1116934/148‑1 CCTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGT < 1:251608/148‑1 CCTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGT < 1:184628/148‑1 CTACAGGAAACGCGTTATTATTCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTA < 2:671641/148‑1 CTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTA < 2:900389/148‑1 CTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTA < 2:203857/148‑1 TACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCACGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATTTAGTTTTCAATATAC > 2:668009/1‑148 TACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTAC > 2:1284784/1‑148 CAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTCTTTAAAACTCTTTATTCACTCTGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAA > 2:1111331/1‑148 CAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCTGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAA > 2:443420/1‑148 CAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAA > 2:1281286/1‑148 CAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACATAATAATCTAGTTTTCctcggacaa > 2:1414731/1‑139 AGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAA > 1:641570/1‑148 AGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAA > 2:891581/1‑148 AGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAA > 2:871923/1‑148 AGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTGATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTACAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAA > 1:620334/1‑148 GAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATA < 1:285098/148‑1 GAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATA > 1:1192337/1‑148 |||||||||| CTCATGCTGGGTTTCCCCATTCGGAAATCTCTGGATCAAAGCTTACTTACAGCTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2001257‑2001402‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATA > CP000730/2001459‑2001605 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |