New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP000730 | = 2001402 | NA (NA) | 10 (0.080) +CTCCTACAGG |
7/274 | 7.7 | 60.5% | intergenic (‑11/+205) | rrl3/USA300HOU_t0051 | 23S ribosomal RNA/tRNA‑Ala |
? | CP000730 | 2001459 = | 7 (0.050) | intergenic (‑68/+148) | rrl3/USA300HOU_t0051 | 23S ribosomal RNA/tRNA‑Ala | |||||
Rejected: Coverage evenness skew score above cutoff. |
GAAATCTCTGGATCAAAGCTTACTTACAGCTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTC > CP000730/2001280‑2001536 | gagaTCTCTGGATCAACGCTTACTTACAGCTCCCCAACGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTaa < 1:65085/145‑1 (MQ=0) aacgCTTACTTACAGCTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGtt < 1:807869/145‑1 (MQ=1) catcTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATaaaaa < 1:440311/145‑1 (MQ=1) cctgtcgatgtcaGTAGCGTCCTTCATCGGCTCGTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGt > 2:365662/13‑148 (MQ=1) gtcccAATGCATCCACCGTGCGCCCTTAATACCTTAATCTATGTTTCAACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGa < 2:412010/145‑1 (MQ=0) aaacctttgcttCCACAATTTTTATAAGTCATACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTACTCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAActc < 1:283543/138‑1 (MQ=1) | GAAATCTCTGGATCAAAGCTTACTTACAGCTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTC > CP000730/2001280‑2001536 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |