New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 2001402NA (NA)10 (0.080)
+CTCCTACAGG
7/274 7.7 60.5% intergenic (‑11/+205) rrl3/USA300HOU_t0051 23S ribosomal RNA/tRNA‑Ala
?CP000730 2001459 = 7 (0.050)intergenic (‑68/+148) rrl3/USA300HOU_t0051 23S ribosomal RNA/tRNA‑Ala
Rejected: Coverage evenness skew score above cutoff.

GAAATCTCTGGATCAAAGCTTACTTACAGCTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTC  >  CP000730/2001280‑2001536
                                                                                                                          |                                                                                                                                      
gagaTCTCTGGATCAACGCTTACTTACAGCTCCCCAACGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTaa                                                                                                               <  1:65085/145‑1 (MQ=0)
              aacgCTTACTTACAGCTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGtt                                                                                                 <  1:807869/145‑1 (MQ=1)
                          catcTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATaaaaa                                                                                     <  1:440311/145‑1 (MQ=1)
                                       cctgtcgatgtcaGTAGCGTCCTTCATCGGCTCGTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGt                                                                        >  2:365662/13‑148 (MQ=1)
                                                                           gtcccAATGCATCCACCGTGCGCCCTTAATACCTTAATCTATGTTTCAACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGa                                    <  2:412010/145‑1 (MQ=0)
                                                                                                             aaacctttgcttCCACAATTTTTATAAGTCATACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTACTCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAActc  <  1:283543/138‑1 (MQ=1)
                                                                                                                          |                                                                                                                                      
GAAATCTCTGGATCAAAGCTTACTTACAGCTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTC  >  CP000730/2001280‑2001536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.