New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 2001402NA (NA)10 (0.080)
+CTCCTACAGG		 7/274 7.7 60.5% intergenic (‑11/+205) rrl3/USA300HOU_t0051 23S ribosomal RNA/tRNA‑Ala
?CP000730 2001459 = 7 (0.050)intergenic (‑68/+148) rrl3/USA300HOU_t0051 23S ribosomal RNA/tRNA‑Ala
Rejected: Coverage evenness skew score above cutoff.

CATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATA  >  CP000730/2001319‑2001605
                                                                                                                                            |                                                                                                                                                  
cctgtcgatgtcaGTAGCGTCCTTCATCGGCTCGTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGt                                                                                                                                             >  2:365662/13‑148 (MQ=1)
                                    gtcccAATGCATCCACCGTGCGCCCTTAATACCTTAATCTATGTTTCAACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGa                                                                                                         <  2:412010/145‑1 (MQ=0)
                                                                      aaacctttgcttCCACAATTTTTATAAGTCATACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTACTCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAActc                                                                       <  1:283543/138‑1 (MQ=1)
                                                                                            taaaaGTCAAACGTTAACATGAAGTTACCTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTg                                                 <  2:464473/145‑1 (MQ=1)
                                                                                                    aaccGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAAACTCGTCAATCTTCTTTCGAATACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATc                                         <  2:849264/145‑1 (MQ=1)
                                                                                                                                           tAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCTCTCGGTTTTGCTTGGTAAAATCTTTATTTTACTTACTTATTTAGTTTTCAATGTACAaata  <  2:48953/148‑1 (MQ=2)
                                                                                                                                           tAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTGTCTAGTTTTCAATGTACAaata  <  1:775891/148‑1 (MQ=11)
                                                                                                                                            |                                                                                                                                                  
CATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATA  >  CP000730/2001319‑2001605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.