New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1708636 =	121 (0.960)	6 (0.050)	3/268	7.1	5.1%	intergenic (+81/+121)	USA300HOU_1602/sem	hypothetical membrane protein/enterotoxin
	?	CP000730	1708685 =	116 (1.010)					intergenic (+130/+72)	USA300HOU_1602/sem	hypothetical membrane protein/enterotoxin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGACAAATTGCATTTAGATATCTATTTATTCAAATCATAATTTAATTAAGTTAATCATTAATAATCTTTGACAGTGAAATATAAAGTACCTGTCATTATGTTGTTACAAATAAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1708796‑1708636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttactgctgttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCAGCATACA  >  CP000730/1708685‑1708824                                                                                                                                                                                                                                                                                                               TGACAAATTGCATTTAGATATCTATTTATTCAAATCATAATTTAATTAAGTTAATCATTAATAATCTTTGACAGTGAAATATAAAGTACCTGTCATTATGTTGTTACAAATAAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCT                                                                                                                                                          >  2:848091/1‑149  GACAAATTGCATTTAGATATCTATTTATTCAAATCATAATTTAATTAAGTTAATCATTAATAATCTTTGACAGTGAAATATAAAGTACCTGTCATTATGTTGTTACAAATAAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTT                                                                                                                                                         >  2:1085214/1‑149    CAAATTGCATTTAGATATCTATTTATTCAAATCATAATTTAATTAAGTTAATCATTAATAATCTTTGACAGTGAAATATAAAGTACCTGTCATTATGTTGTTACAAATAAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTAC                                                                                                                                                       >  1:359313/1‑149     AAACTGAATTTAAACATCTATTTAATCAAATCATAATTTAATAAAGTTAATCATTAATAATCTGTGACAGTGAAATATAAAGTACCTGTCATTATGTTGTTACAAATAAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACT                                                                                                                                                      <  2:1316297/149‑1      AATTGCATTTAGATATCTATTTATTCAAATCATAATTTAATTAAGTTAATCATTAATATTCTTTGACAGTGAAATATAAAGTACCTGTCATTATGTTGTTACAAATAAAAACAGCAGTAAGGATGCTAACACTTAGCAAATTCTTACTa                                                                                                                                                     >  2:522123/1‑148      AATTGCATTTAGATATCTATTTATTCAAATCATAATTTAATTAAGTTAATCATTAATAATCTTTGCCAGTGAAATATAAAGTACCTGTCATTATGTTGGTACAAATAAAAACAGCAGTAAGGATGCTAACATTTAGAAAAGTCTTACTG                                                                                                                                                     >  2:641008/1‑149       ATTGCATTTAGATATCTATTGATTCAAAGCATAATTTAATTAAGTTAATCATTAATAATCTTTGACAGTGAAATATAAAGTACCTGTCATTATGTTGTTACAAATAAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGC                                                                                                                                                    <  2:459659/149‑1             tttgggTATCTATTTATTCAAATCATAATTTAATTAAGTTAATCATTAATAATCTTTGACAGTGAAATATAAAGTACCTGTCATTATGTTGTTACAAATAAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTT                                                                                                                                              <  2:169756/143‑1             TTTAGATATCTATTTATTCAAATCATAATTTAATTAAGTTAATCATTAATAATCTTTGACAGTGAAATATAAAGTACCTGTCATTATGTTGTTACAAATAAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTT                                                                                                                                              <  1:812661/149‑1             TTTAGATATCTATTTATTCAAATCATAATTTAATTAAGTTAATCATTAATAATCTTTGACAGTGAAATATAAAGTACCTGTCATTATGTTGTTACAAATAAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTT                                                                                                                                              <  2:5064/149‑1                                              TTAAGTTAATCATTAATAATCTTTGACAGTGAAATATAAAGTACCTGTCATTATGTTGTTACAAATAAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATA                                                                                                             >  1:743480/1‑149                                                                                TATAAAGTACCTGTCATTATGTTGTTACAAATAAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAA                                                                           <  2:743480/149‑1                                                                                                                AAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTATTGATTAACTTAATTAAATTATGATTTGAATAAATAGATATATAA                                           >  2:156287/1‑149                                                                                                                AAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAA                                           >  2:156288/1‑149                                                                                                                AAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAA                                           >  2:1301635/1‑149                                                                                                                AAAAACACCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAA                                           >  2:21112/1‑149                                                                                                                                                      tcttgtTGTTTTTATTTGTAAAAACATATTGACAGGTACTTTATATTTCACTGTAAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGGAATTTGTCACTATTGATAGTTTTATTATCAGCAT     <  2:805080/143‑1                                                                                                                                                      TACTGCTGTTTTTATTTGTAACAACATAATGACAGGTATTTTATATTTCACTGTAAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCAGCAT     <  2:95239/149‑1                                                                                                                                                         TGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCAGCATACA  >  1:1213396/1‑149                                                                                                                                                                                                                                                                                                               TGACAAATTGCATTTAGATATCTATTTATTCAAATCATAATTTAATTAAGTTAATCATTAATAATCTTTGACAGTGAAATATAAAGTACCTGTCATTATGTTGTTACAAATAAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1708796‑1708636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttactgctgttttTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCAGCATACA  >  CP000730/1708685‑1708824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.