New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 1708636 =121 (0.960)6 (0.050) 3/268 7.1 5.1% intergenic (+81/+121) USA300HOU_1602/sem hypothetical membrane protein/enterotoxin
?CP000730 1708685 = 116 (1.010)intergenic (+130/+72) USA300HOU_1602/sem hypothetical membrane protein/enterotoxin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 124 total aligned reads displayed.

TAAAAACATCAAGAAAATTATATTCGATGCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAA  >  CP000730/1708489‑1708784
                                                                                                                                                   |                                                                                                                                                    
tAAAAACATCAAGAAAATTATATTCGATGCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGaa                                                                                                                                                     >  2:935084/1‑149 (MQ=255)
tAAAAACATCAAGAAAATTATATTCGATGCATCTATTGTCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGaa                                                                                                                                                     >  2:288807/1‑149 (MQ=255)
 aaaaaCATCAAGATAATTATTTTCGATGCATTTATTATCATCGTTTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGaaa                                                                                                                                                    <  2:292286/149‑1 (MQ=255)
 aaaaaCATCAAGAAAATTATATTCGATGCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGaaa                                                                                                                                                    <  2:1023849/149‑1 (MQ=255)
      cATCAAGAAAATTATATTCGATGCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAAcagc                                                                                                                                               <  1:56583/149‑1 (MQ=255)
           aGAAAATTATATTCGATGCATTTATTATCATCGTCTTTATCTTCTTTTTACTATATTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTaa                                                                                                                                          >  2:875023/1‑149 (MQ=255)
           aGAAAATTATATTCGATGCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTaa                                                                                                                                          >  1:1133174/1‑149 (MQ=255)
           aGAAAATTATATTCGATGCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTaa                                                                                                                                          >  1:291649/1‑149 (MQ=255)
           aGAAAATTATATTCGATGCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTaa                                                                                                                                          >  1:221528/1‑149 (MQ=255)
             aaaaTTATATTCGATGCATTTATTATCATCGTCTTTAACATCTTTTTACTATAGTAGTTATTTTTTGTACTAGCACAGTTAATGATAATTGTTTCGTATCTAATTTCTTTGTGCATTAAAGAAAATTCTAATAGAAAATATCAGTAAGa                                                                                                                                        >  2:545281/1‑149 (MQ=255)
                  tattgttgATCCATCTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACtttt                                                                                                                                   <  2:701306/142‑1 (MQ=255)
                  tataTTCGATGCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACtttt                                                                                                                                   <  2:925280/149‑1 (MQ=255)
                  tataTTCGATGCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACtttt                                                                                                                                   <  2:929623/149‑1 (MQ=255)
                  tataTTCGATGCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACtttt                                                                                                                                   <  2:1079436/149‑1 (MQ=255)
                       tCGATGCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACAGAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTATAGATAGTTTTAATGGAAAACAGTAGTAAGATTTTTCTAAg                                                                                                                              >  2:620897/1‑149 (MQ=255)
                          aTGCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTTGCATAAAACAGCAGTAAGACTTTTCTAAgtgt                                                                                                                           <  2:1298496/149‑1 (MQ=255)
                          aTGCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAgtgt                                                                                                                           <  1:847670/149‑1 (MQ=255)
                            gCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTa                                                                                                                         <  1:1002229/149‑1 (MQ=255)
                            gCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTa                                                                                                                         <  1:581373/149‑1 (MQ=255)
                             cATTTATTACCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAg                                                                                                                        <  1:333052/149‑1 (MQ=255)
                               tttATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCa                                                                                                                      >  2:854139/1‑149 (MQ=255)
                                ttattaTCTTCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCAt                                                                                                                     <  2:353008/149‑1 (MQ=255)
                                ttattaTCATCCTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCAt                                                                                                                     <  2:1131623/149‑1 (MQ=255)
                                 tattatCATCGTCTTTATCTTCTTTTTAGTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATc                                                                                                                    >  1:944324/1‑149 (MQ=255)
                                 tattatCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATc                                                                                                                    >  1:363787/1‑149 (MQ=255)
                                 tattatCATCGTCTTGATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATc                                                                                                                    >  1:1142635/1‑149 (MQ=255)
                                    tatCATGGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCATTTGTGCATTAAAGATAATTCTAATATAAAACAGCAGTAAGACTTTCCTATATGTTAGCATGCtt                                                                                                                 >  2:1246184/1‑149 (MQ=255)
                                    tatCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAGGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCtt                                                                                                                 >  1:308410/1‑149 (MQ=255)
                                    tatCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCtt                                                                                                                 >  2:340583/1‑149 (MQ=255)
                                     atcatcGTCTTGATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTa                                                                                                                <  1:387646/149‑1 (MQ=255)
                                        atcGTCTTTATCTTCATTTTACTATAGTGGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTCAAGATAATTCTAATAGAAAACAGCAGTAAGACTTGTCTAAGTGTTAGCATCCTTActg                                                                                                             >  1:848091/1‑149 (MQ=255)
                                           gTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTActgctg                                                                                                          <  1:238517/149‑1 (MQ=255)
                                                 ttcttctTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTa                                                                                                    <  2:462042/148‑1 (MQ=255)
                                                 ttcttctTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTa                                                                                                    <  2:443527/148‑1 (MQ=255)
                                                 aTCTTCTTTTGACTATTGTAGTTTCAGGGTTGAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTa                                                                                                    <  1:303554/149‑1 (MQ=255)
                                                  tcttctTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAATACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTAt                                                                                                   >  2:561554/1‑149 (MQ=255)
                                                  tcttctTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTAt                                                                                                   >  2:10944/1‑149 (MQ=255)
                                                    ttcttTTTACTATAGTAGTTGTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTATCATCCTTACTGCTGTTTTTAttt                                                                                                 <  1:993737/149‑1 (MQ=255)
                                                     tcttTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTg                                                                                                >  1:855406/1‑149 (MQ=255)
                                                      cttTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTga                                                                                               <  2:683162/149‑2 (MQ=255)
                                                        ttttACTATAGTAGTTTTATTTTGTAATTACACAGTAAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTaa                                                                                             >  2:106071/1‑149 (MQ=255)
                                                              tataGTAGTTTTTTTTTGTTATTACACAGTTCATCATTTTTGTTTCGGATCTAATTGCGCCGTGGATTATAGATAATTCTAAAATAAAACATCAGTAAGAATTTTCTAAGTGTTAGAATCCTTAATGCTGTTTTTATTTGTAacaacaa                                                                                       >  2:1272633/1‑148 (MQ=255)
                                                              tataGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGAATCATTACTGCTGTTTTTATTTGTAACACCAt                                                                                       >  2:788658/1‑149 (MQ=255)
                                                                  gtagtTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTGCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATg                                                                                   >  2:715170/1‑149 (MQ=255)
                                                                   tagtTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGa                                                                                  >  2:957694/1‑149 (MQ=255)
                                                                         tATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTa                                                                            <  1:183534/149‑1 (MQ=255)
                                                                           ttttGTAATTCGACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTACGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACt                                                                          <  2:623809/149‑1 (MQ=255)
                                                                           ttttGTAATTATACAGTTAATCATTTTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACt                                                                          <  2:43921/149‑1 (MQ=255)
                                                                           ttttGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACt                                                                          <  2:893741/149‑1 (MQ=255)
                                                                            tttGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACtt                                                                         <  2:811767/149‑1 (MQ=255)
                                                                            tttGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACtt                                                                         <  1:881876/149‑1 (MQ=255)
                                                                            tttGTAACTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACtt                                                                         <  1:570584/149‑1 (MQ=255)
                                                                               gTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTtat                                                                      <  1:1255823/149‑1 (MQ=255)
                                                                                 aaTTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTatat                                                                    >  1:1033285/1‑149 (MQ=255)
                                                                                 aaTTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTatat                                                                    >  2:307904/1‑149 (MQ=255)
                                                                                    tACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTc                                                                 >  2:566213/1‑149 (MQ=255)
                                                                                    tACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTc                                                                 <  2:435995/149‑1 (MQ=255)
                                                                                        caGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTg                                                             <  2:1165445/149‑1 (MQ=255)
                                                                                        caGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTg                                                             <  2:925822/149‑1 (MQ=255)
                                                                                          gTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTGAGGGTTACCTCTCTCACGCTTTTTTTTATTTGTGACAACATAATGACAGGTACGTtatttgtgtctgtt                                                           >  1:915748/1‑138 (MQ=255)
                                                                                           ttAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCa                                                          >  1:95239/1‑149 (MQ=255)
                                                                                           ttAATCATATTTGTTTCGTATCGAATTACTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCa                                                          >  1:805080/1‑149 (MQ=255)
                                                                                            tAATCATATTTGTTTTGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCaa                                                         <  1:288807/149‑1 (MQ=255)
                                                                                            tAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCaa                                                         <  1:935084/149‑1 (MQ=255)
                                                                                              aTCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAg                                                       >  1:871239/1‑149 (MQ=255)
                                                                                              aTCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAACAAAGTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAg                                                       >  1:320343/1‑149 (MQ=255)
                                                                                               tCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGa                                                      >  1:88229/1‑149 (MQ=255)
                                                                                                cATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGat                                                     <  1:6759/149‑1 (MQ=255)
                                                                                                  tatTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGatta                                                   <  1:675302/149‑1 (MQ=255)
                                                                                                  tatTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGatta                                                   <  1:1057059/149‑1 (MQ=255)
                                                                                                   ttttGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGattat                                                  <  1:3703/148‑1 (MQ=255)
                                                                                                    tttGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAATGattatt                                                 >  2:593441/1‑149 (MQ=255)
                                                                                                    tttGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGattatt                                                 >  2:664567/1‑149 (MQ=255)
                                                                                                    tttGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAACTTCCTTACTGCTGTTTTTATTTGTAACAACATAATGCCAGGTGCTTTATATTTCACTGTCAAAGattatt                                                 >  2:651550/1‑149 (MQ=255)
                                                                                                           cGTATCGATGTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGAtt                                          >  2:14285/1‑149 (MQ=255)
                                                                                                           cGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTCATATTTCACTGTCAAAGCTTATTAATCAta                                          >  2:46908/1‑148 (MQ=255)
                                                                                                              aTCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAAc                                       <  2:490930/149‑1 (MQ=255)
                                                                                                                 gAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTCGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTCTCTTTCACTGTAAACGATTATTAATGATTAACtga                                    >  2:1036487/1‑147 (MQ=255)
                                                                                                                 gAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATACTGACGGGTACTTTATATTTCACTGTAAAAGATTATTAATGATGCACtta                                    >  2:574479/1‑149 (MQ=255)
                                                                                                                 gAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACtta                                    >  1:844168/1‑149 (MQ=255)
                                                                                                                  aaTTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACttaa                                   <  1:354605/149‑1 (MQ=255)
                                                                                                                  aaTTCCTTTGTGCAATAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACttaa                                   <  1:670835/149‑1 (MQ=255)
                                                                                                                        tttGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTACCAACAGAATGACAGGTACTTTATATTTCACTCTCAAAGATTATTAATGATTAACTTaattaaat                             <  1:981859/149‑1 (MQ=255)
                                                                                                                        tttGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaat                             <  1:375433/149‑1 (MQ=255)
                                                                                                                        tttGTGCATTAAAGATAACTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTCTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaat                             <  1:60395/149‑1 (MQ=255)
                                                                                                                          tgtgacttAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTACTGATTAACTTaattaaatta                           >  2:1018063/7‑149 (MQ=255)
                                                                                                                          tgtgCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaatta                           <  2:944324/149‑1 (MQ=255)
                                                                                                                          tgtgCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaatta                           <  2:363787/149‑1 (MQ=255)
                                                                                                                            tgCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTATTTTATATGTTTCTGTCAAAGATTATTAATGATTAACTTAATTAAATTATg                         >  1:103894/1‑149 (MQ=255)
                                                                                                                             gCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGa                        >  2:723433/1‑149 (MQ=255)
                                                                                                                             gCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGa                        >  1:820316/1‑149 (MQ=255)
                                                                                                                              cATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGAt                       <  1:1001842/149‑1 (MQ=255)
                                                                                                                                       tAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACCGGTACTTTATATTTCACTGTAAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGaataaa              <  2:783307/149‑1 (MQ=255)
                                                                                                                                       tAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGTTTTGaataaa              >  1:379394/1‑149 (MQ=255)
                                                                                                                                           tCTAATAGAAAACATCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTTCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTATCAAAGATTATTAATTATTAACTTAATTAAATTATGATTTGAATAAATAGa          <  2:463897/149‑1 (MQ=255)
                                                                                                                                           tCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGa          >  1:572305/1‑149 (MQ=255)
                                                                                                                                                 aGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGCATAAATAGATATCTa    >  2:1157251/1‑149 (MQ=255)
                                                                                                                                                 aGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTa    >  1:121131/1‑149 (MQ=255)
                                                                                                                                                  gAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTaa   >  1:1091159/1‑149 (MQ=255)
                                                                                                                                                   aaaaCAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATACCCaaa  >  2:169756/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
TAAAAACATCAAGAAAATTATATTCGATGCATTTATTATCATCGTCTTTATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAA  >  CP000730/1708489‑1708784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.