New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 1708636 =121 (0.960)6 (0.050) 3/268 7.1 5.1% intergenic (+81/+121) USA300HOU_1602/sem hypothetical membrane protein/enterotoxin
?CP000730 1708685 = 116 (1.010)intergenic (+130/+72) USA300HOU_1602/sem hypothetical membrane protein/enterotoxin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 119 total aligned reads displayed.

ATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCAGCATACA  >  CP000730/1708538‑1708824
                                                                                                                                                   |                                                                                                                                           
ttcttctTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTa                                                                                                                                            <  2:443527/148‑1 (MQ=255)
ttcttctTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTa                                                                                                                                            <  2:462042/148‑1 (MQ=255)
 tcttctTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAATACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTAt                                                                                                                                           >  2:561554/1‑149 (MQ=255)
 tcttctTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTAt                                                                                                                                           >  2:10944/1‑149 (MQ=255)
   ttcttTTTACTATAGTAGTTGTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTATCATCCTTACTGCTGTTTTTAttt                                                                                                                                         <  1:993737/149‑1 (MQ=255)
    tcttTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTg                                                                                                                                        >  1:855406/1‑149 (MQ=255)
     cttTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTga                                                                                                                                       <  2:683162/149‑2 (MQ=255)
             tataGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACAt                                                                                                                               >  2:866145/1‑149 (MQ=255)
                 gtagtTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTGCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATg                                                                                                                           >  2:715170/1‑149 (MQ=255)
                 gtagtTTTATTTGGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTCACAACATAAta                                                                                                                           >  2:928481/1‑148 (MQ=255)
                        tATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTa                                                                                                                    <  1:183534/149‑1 (MQ=255)
                          ttttGTAATTCGACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTACGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACt                                                                                                                  <  2:623809/149‑1 (MQ=255)
                          ttttGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACt                                                                                                                  <  2:893741/149‑1 (MQ=255)
                           tttGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACtt                                                                                                                 <  1:881876/149‑1 (MQ=255)
                           tttGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACtt                                                                                                                 <  2:811767/149‑1 (MQ=255)
                           tttGTAACTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACtt                                                                                                                 <  1:570584/149‑1 (MQ=255)
                              gTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTtat                                                                                                              <  1:1255823/149‑1 (MQ=255)
                                aaTTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTatat                                                                                                            >  2:307904/1‑149 (MQ=255)
                                aaTTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTatat                                                                                                            >  1:1033285/1‑149 (MQ=255)
                                   tACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTGCTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTc                                                                                                         >  1:308695/1‑149 (MQ=255)
                                   tACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTc                                                                                                         >  2:566213/1‑149 (MQ=255)
                                   tACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTc                                                                                                         <  2:435995/149‑1 (MQ=255)
                                   tACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTc                                                                                                         >  2:102988/1‑149 (MQ=255)
                                     cacaGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGCCAGTTCCTTTATATTTcct                                                                                                       >  2:614255/1‑147 (MQ=255)
                                     cacaGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCAc                                                                                                       >  2:45899/1‑149 (MQ=255)
                                       caGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTg                                                                                                     <  2:1165445/149‑1 (MQ=255)
                                       caGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTg                                                                                                     <  2:925822/149‑1 (MQ=255)
                                       caGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTg                                                                                                     <  1:258966/149‑1 (MQ=255)
                                         gTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTGAGGGTTACCTCTCTCACGCTTTTTTTTATTTGTGACAACATAATGACAGGTACGTtatttgtgtctgtt                                                                                                   >  1:915748/1‑138 (MQ=255)
                                          ttAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCa                                                                                                  >  1:95239/1‑149 (MQ=255)
                                          ttAATCATATTTGTTTCGTATCGAATTACTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCa                                                                                                  >  1:805080/1‑149 (MQ=255)
                                           tAATCATATTTGTTTTGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCaa                                                                                                 <  1:288807/149‑1 (MQ=255)
                                           tAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCaa                                                                                                 <  1:935084/149‑1 (MQ=255)
                                             aTCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAg                                                                                               >  1:871239/1‑149 (MQ=255)
                                             aTCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAACAAAGTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAg                                                                                               >  1:320343/1‑149 (MQ=255)
                                               cATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGat                                                                                             <  1:6759/149‑1 (MQ=255)
                                                 tatTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGatta                                                                                           <  1:1057059/149‑1 (MQ=255)
                                                 tagttGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCATTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGatta                                                                                           <  1:636179/146‑1 (MQ=255)
                                                  ttttGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGattat                                                                                          <  1:3703/148‑1 (MQ=255)
                                                   tttGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAATGattatt                                                                                         >  2:593441/1‑149 (MQ=255)
                                                   tttGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGattatt                                                                                         >  2:664567/1‑149 (MQ=255)
                                                   tttGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAACTTCCTTACTGCTGTTTTTATTTGTAACAACATAATGCCAGGTGCTTTATATTTCACTGTCAAAGattatt                                                                                         >  2:651550/1‑149 (MQ=255)
                                                    ttGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCCAAGAttatta                                                                                        >  2:356468/1‑149 (MQ=255)
                                                          cGTATCGATGTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGAtt                                                                                  >  2:14285/1‑149 (MQ=255)
                                                             aTCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAAc                                                                               <  2:490930/149‑1 (MQ=255)
                                                                gAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTCGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTCTCTTTCACTGTAAACGATTATTAATGATTAACtga                                                                            >  2:1036487/1‑147 (MQ=255)
                                                                gAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACtta                                                                            >  1:844168/1‑149 (MQ=255)
                                                                 aaTTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACttaa                                                                           <  2:1278414/149‑1 (MQ=255)
                                                                 aaTTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACttaa                                                                           <  1:354605/149‑1 (MQ=255)
                                                                 aaTTCCTTTGTGCAATAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACttaa                                                                           <  1:670835/149‑1 (MQ=255)
                                                                       tttGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaat                                                                     <  1:375433/149‑1 (MQ=255)
                                                                       tttGTGCATTAAAGATAACTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTCTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaat                                                                     <  1:60395/149‑1 (MQ=255)
                                                                         tgtgacttAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTACTGATTAACTTaattaaatta                                                                   >  2:1018063/7‑149 (MQ=255)
                                                                         tgtgCCTTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaatta                                                                   <  2:1142635/149‑1 (MQ=255)
                                                                         tgtgCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaatta                                                                   <  2:944324/149‑1 (MQ=255)
                                                                         tgtgCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaatta                                                                   <  2:363787/149‑1 (MQ=255)
                                                                           tgCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTATTTTATATGTTTCTGTCAAAGATTATTAATGATTAACTTAATTAAATTATg                                                                 >  1:103894/1‑149 (MQ=255)
                                                                            gCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGa                                                                >  1:820316/1‑149 (MQ=255)
                                                                            gCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGa                                                                >  2:723433/1‑149 (MQ=255)
                                                                             cATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGAt                                                               <  1:1001842/149‑1 (MQ=255)
                                                                                   aGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATCAATGATTAACTTAATTAAATTATGATTTGaat                                                         <  1:854139/149‑1 (MQ=255)
                                                                                     aTAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTCTATTTGTAACAACATAATGACAGGGACTTTATATTTCACTGTCAAAGATTATTAGTGATTAACTTAATTAAATTATGATTTGaataa                                                       >  1:900470/1‑149 (MQ=255)
                                                                                      tAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACCGGTACTTTATATTTCACTGTAAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGaataaa                                                      <  2:783307/149‑1 (MQ=255)
                                                                                          tCTAATAGAAAACATCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTTCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTATCAAAGATTATTAATTATTAACTTAATTAAATTATGATTTGAATAAATAGa                                                  <  2:463897/149‑1 (MQ=255)
                                                                                          tCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGa                                                  >  1:572305/1‑149 (MQ=255)
                                                                                               tAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCt                                             <  1:106071/149‑1 (MQ=255)
                                                                                                aGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGCATAAATAGATATCTa                                            >  2:1157251/1‑149 (MQ=255)
                                                                                                aGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTa                                            >  1:121131/1‑149 (MQ=255)
                                                                                                 gAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTaa                                           >  1:1091159/1‑149 (MQ=255)
                                                                                                  aaaaCAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTaaa                                          >  1:812661/1‑149 (MQ=255)
                                                                                                  aaaaCAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTaaa                                          >  2:5064/1‑149 (MQ=255)
                                                                                                  aaaaCAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATACCCaaa                                          >  2:169756/1‑149 (MQ=255)
                                                                                                        gcagTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGCTTTGAATCAATAGATATCTAAATGCAAt                                    >  2:459659/1‑149 (MQ=255)
                                                                                                         tagTAAGAATTTGCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGAATATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAAtt                                   <  2:522123/148‑1 (MQ=255)
                                                                                                         cagTAAGACTTTTCTAAATGTTAGCATCCTTACTGCTGTTTTTATTTGTACCAACATAATGACAGGTACTTTATATTTCACTGGCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAAtt                                   <  2:641008/149‑1 (MQ=255)
                                                                                                          agTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCACAGATTATTAATGATTAACTTTATTAAATTATGATTTGATTAAATAGATGTTTAAATTCAGttt                                  >  2:1316297/1‑149 (MQ=255)
                                                                                                           gTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTg                                 <  1:359313/149‑1 (MQ=255)
                                                                                                             aaGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTc                               <  2:1085214/149‑1 (MQ=255)
                                                                                                              aGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCa                              <  2:848091/149‑1 (MQ=255)
                                                                                                                       tAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATa                     <  1:829544/149‑1 (MQ=255)
                                                                                                                       tAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATa                     <  1:459703/149‑1 (MQ=255)
                                                                                                                           tgtTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGCTTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGttt                 >  2:263815/1‑149 (MQ=255)
                                                                                                                           tgtTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGTTAGttt                 >  2:837016/1‑149 (MQ=255)
                                                                                                                           tgtTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGttt                 >  1:652091/1‑149 (MQ=255)
                                                                                                                           tgtTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGttt                 >  2:263695/1‑149 (MQ=255)
                                                                                                                            gtTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGtttt                >  1:88667/1‑149 (MQ=255)
                                                                                                                            gtTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTCGTCACTATTGATAGtttt                >  1:717944/1‑149 (MQ=255)
                                                                                                                            gtTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATAATTAACTTAATTAAATTATGTTTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGTTAGtttt                >  1:541519/1‑149 (MQ=255)
                                                                                                                              tAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTttat              <  1:566213/149‑1 (MQ=255)
                                                                                                                              tAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTttat              <  1:102988/149‑1 (MQ=255)
                                                                                                                              tAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTttat              <  2:308695/149‑1 (MQ=255)
                                                                                                                              tAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGAACTTTATATTTCACTGTAAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATATATATCTAACTGCTATTTGTCAATATTTATAGTTttat              >  1:119132/1‑149 (MQ=255)
                                                                                                                                gCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTttatta            >  1:136970/1‑149 (MQ=255)
                                                                                                                                gCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTAGAAGATTATTCCTGTCCATCTTAATTAAATTATGATTTAAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTttatta            >  1:982132/1‑149 (MQ=255)
                                                                                                                                  aTCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATc          >  2:674476/1‑149 (MQ=255)
                                                                                                                                  aTCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATCTTTCACTATTGATAGTTTTATTATc          >  1:1110192/1‑149 (MQ=255)
                                                                                                                                   tCCTTACTGCTTTTTTTATTTGTAACAACATAATGACAGGTACTATACATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCa         <  1:620897/149‑1 (MQ=255)
                                                                                                                                       tcttgttgTTTTTATTTGTAAAAACATATTGACAGGTACTTTATATTTCACTGTAAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGGAATTTGTCACTATTGATAGTTTTATTATCAGCAt     <  2:805080/143‑1 (MQ=255)
                                                                                                                                       tACTGCTGTTTTTATTTGTAACAACATAATGACAGGTATTTTATATTTCACTGTAAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCAGCAt     <  2:95239/149‑1 (MQ=255)
                                                                                                                                          tgctgTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCAGCATACa  >  1:1213396/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                           
ATCTTCTTTTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCAGCATACA  >  CP000730/1708538‑1708824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.