New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 111410687 (0.690)6 (0.050) 3/262 7.1 7.1% intergenic (+35/‑4) USA300HOU_1045/USA300HOU_1046 hypothetical membrane protein/hypothetical protein
?CP000730 = 1114131 80 (0.720)coding (22/105 nt) USA300HOU_1046 hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGCTCTTAATTTAATTGCAATTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTAT  >  CP000730/1113959‑1114253
                                                                                                                                                   |                                                                                                                                                   
tGGCTCTTAATTTAATTGCAATTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTa                                                                                                                                                    <  1:1150153/149‑1 (MQ=255)
      ttaattcaacgacAATTGTCATATTGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAgttgt                                                                                                                                              <  1:241549/137‑1 (MQ=255)
       taatttaattGCAATTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAgttgtt                                                                                                                                             >  1:504442/1‑149 (MQ=255)
          tttgattTCAATTGTCGTAGGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATTAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAat                                                                                                                                          <  2:191191/149‑1 (MQ=255)
          tttcattGCAATTGTCTTATGGGTTATCGTGATAAAAATATTGATGTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAat                                                                                                                                          <  2:942671/149‑1 (MQ=255)
           ttaattGCAATTTTCTTATGGATTATCATAATGATTATGTTGATTTCTAAAAAAGAATTAAAAGAAACAACACATAAGGACTGTGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAatt                                                                                                                                         <  2:1009246/149‑1 (MQ=255)
            taattGCAATTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAttta                                                                                                                                        >  1:823225/1‑149 (MQ=255)
            taataGAAATTGTCTTATGGGTTATCGTGATAATTATGTTGATTTCTAAAAAATAATAAAAATAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAatta                                                                                                                                        <  2:1101259/149‑1 (MQ=255)
            taagtGCAATTGTTTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAatta                                                                                                                                        <  2:224753/149‑1 (MQ=255)
             aattGCAATTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAattat                                                                                                                                       >  2:1245677/1‑149 (MQ=255)
             aattGCAATTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATAATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATATTAAGTTGTTaataat                                                                                                                                       >  2:789946/1‑149 (MQ=255)
             aattGCAATTGTCTTAAGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAattat                                                                                                                                       <  2:1321484/149‑1 (MQ=255)
                    aTTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTGGATAc                                                                                                                                >  2:451854/1‑149 (MQ=255)
                    aTTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATAc                                                                                                                                >  2:376804/1‑149 (MQ=255)
                    aTTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATAc                                                                                                                                >  2:376979/1‑149 (MQ=255)
                     ttGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAGACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATAca                                                                                                                               <  1:308454/149‑1 (MQ=255)
                         cTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATAcaacca                                                                                                                           >  2:97501/1‑149 (MQ=255)
                         cTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATAcaacca                                                                                                                           >  2:96746/1‑149 (MQ=255)
                             tGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACAt                                                                                                                       <  1:602136/149‑1 (MQ=255)
                             tGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACAt                                                                                                                       <  2:768822/149‑1 (MQ=255)
                                gTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACAtttt                                                                                                                    >  2:122464/1‑149 (MQ=255)
                                gTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACAtttt                                                                                                                    >  2:838183/1‑149 (MQ=255)
                                gTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACAtttt                                                                                                                    >  2:176752/1‑149 (MQ=255)
                                    tCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATg                                                                                                                >  2:357115/1‑149 (MQ=255)
                                    tCGTGATGATTATGTTCATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATTTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATg                                                                                                                <  1:130007/149‑1 (MQ=255)
                                      gTGATGGTTATGGTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGt                                                                                                              <  2:576559/149‑1 (MQ=255)
                                       tgatgaTTATGTTGACTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGtt                                                                                                             <  1:1162955/149‑1 (MQ=255)
                                       cgatgatTATGTGGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGtt                                                                                                             <  1:787243/148‑1 (MQ=255)
                                       agaacataaagatGATTTCTAAAAAAGAAACAAAAAAAACAACACATAACGACGATAAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATATTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGtt                                                                                                             <  2:403965/137‑1 (MQ=255)
                                         atgatTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGtttt                                                                                                           >  1:653750/1‑149 (MQ=255)
                                         atgatTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGtttt                                                                                                           >  1:221610/1‑149 (MQ=255)
                                              tATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTAtttt                                                                                                      <  2:1341572/149‑1 (MQ=255)
                                                tGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATAATTATCATTACTATGTTATTAGCAAACGAAAAAACATTATAAAGTTAAGTGGTGAATTATTACAGACAACCAACATTTTAATGGTTTTATTTTTa                                                                                                    >  2:449625/1‑149 (MQ=255)
                                                 gTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTaa                                                                                                   >  2:753643/1‑149 (MQ=255)
                                                   tGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACt                                                                                                 >  1:943395/1‑149 (MQ=255)
                                                   tGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACt                                                                                                 >  2:1143073/1‑149 (MQ=255)
                                                   tGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACt                                                                                                 >  2:1199421/1‑149 (MQ=255)
                                                   tGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACt                                                                                                 >  1:368470/1‑149 (MQ=255)
                                                              aaaGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCtt                                                                                      >  1:786731/1‑149 (MQ=255)
                                                              aaaGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCtt                                                                                      >  2:848105/1‑149 (MQ=255)
                                                              aaaGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATATTTAACTTTGTAGTTCtt                                                                                      >  2:1184342/1‑149 (MQ=255)
                                                                            aacaacACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACg                                                                        <  1:293879/149‑1 (MQ=255)
                                                                                  acaTAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTaaa                                                                  <  2:1249139/149‑1 (MQ=255)
                                                                                   caTAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAACATGTTAAGTTGGTAATTCTTAGATACAACCAACATTTTAATGGTTTTATTTTTAGCTTTGTAGTTCTTGGAATGTTTGAAGGATTAAAt                                                                 >  1:315107/1‑149 (MQ=255)
                                                                                   caTAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAAt                                                                 >  1:468897/1‑149 (MQ=255)
                                                                                     tAAGGACTATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAg                                                               <  1:1050248/149‑1 (MQ=255)
                                                                                     aaaGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAg                                                               <  1:658717/148‑1 (MQ=255)
                                                                                         aaCGAAGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACAt                                                           <  2:61780/148‑1 (MQ=255)
                                                                                           cGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACAttt                                                         <  2:1253928/149‑1 (MQ=255)
                                                                                           cGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACAttt                                                         <  2:1054031/149‑1 (MQ=255)
                                                                                           cGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACAttt                                                         <  2:112398/149‑1 (MQ=255)
                                                                                           agATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACAttt                                                         <  1:1296945/148‑1 (MQ=255)
                                                                                                   atatTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACt                                                 <  2:265026/149‑1 (MQ=255)
                                                                                                    tatTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACtt                                                <  2:727780/149‑1 (MQ=255)
                                                                                                      tttATCATTAATATGTTCCTAGTAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAg                                              >  2:910372/1‑149 (MQ=255)
                                                                                                      tttATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGATTGTTTGAACGATTAAATAGACATTTAAAATACTTaa                                              >  2:994542/1‑148 (MQ=255)
                                                                                                      tttATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAg                                              >  2:157368/1‑149 (MQ=255)
                                                                                                      tttATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAg                                              >  1:1267461/1‑149 (MQ=255)
                                                                                                          tCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCACCATTTTAATGGTTTTATTTTTAACTTTATAGTTCTTAGAATGTTTGAACGATTAAATAGACATTTATAATACTTAGaata                                          >  1:136099/1‑149 (MQ=255)
                                                                                                          tCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGTAATGTTTGAACGATTAAATAGACATTTTAAATACTAAAaata                                          >  2:1025297/1‑149 (MQ=255)
                                                                                                          tCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAACTACTTAGaata                                          >  2:234744/1‑149 (MQ=255)
                                                                                                          tCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGaata                                          >  2:1215818/1‑149 (MQ=255)
                                                                                                          tCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAAACATTTAAAATACTTAGaata                                          >  2:100786/1‑149 (MQ=255)
                                                                                                              tAATATGTTCATAGCCAAAGAAAAACCACTAAAAGGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGaataataa                                      <  1:28544/149‑1 (MQ=255)
                                                                                                               aaTATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGaataataat                                     >  1:563698/1‑149 (MQ=255)
                                                                                                                 tatGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACAGGTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAAtaataataa                                   >  1:191036/1‑149 (MQ=255)
                                                                                                                           gCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAGATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGa                         >  1:1253207/1‑149 (MQ=255)
                                                                                                                            cAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTACATGaa                        >  2:457100/1‑149 (MQ=255)
                                                                                                                             aaaaGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGaaa                       <  1:925279/149‑1 (MQ=255)
                                                                                                                             aaaaGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTATAGTTCTTGGAATGTTTGAACGATTAAATAGACGTTTAAAATACTTAGAATAATAATAAGTGTGAATGaaa                       >  1:240177/1‑149 (MQ=255)
                                                                                                                               aaGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATg                     <  1:204840/149‑1 (MQ=255)
                                                                                                                                   aaaaCCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCAATGAAATGatat                 >  1:573151/1‑149 (MQ=255)
                                                                                                                                        cATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAAcc            <  2:907478/149‑1 (MQ=255)
                                                                                                                                             aaaTGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGt       <  2:1328970/149‑1 (MQ=255)
                                                                                                                                             aaaTGTTAAGGTGTTAATTATTAGATACAACCAACATTTTAATTGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTTAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGt       <  2:175166/149‑1 (MQ=255)
                                                                                                                                              aaTGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGtt      >  1:953005/1‑149 (MQ=255)
                                                                                                                                              aaTGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCAATGtt      >  1:455378/1‑149 (MQ=255)
                                                                                                                                                tGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGCTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGtttt    <  1:753643/149‑1 (MQ=255)
                                                                                                                                                 gTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTtta   <  1:910372/149‑1 (MQ=255)
                                                                                                                                                 gTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTtta   <  1:157368/149‑1 (MQ=255)
                                                                                                                                                 gTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTtta   <  2:653750/149‑1 (MQ=255)
                                                                                                                                                 gTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTACAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTtta   <  2:221610/149‑1 (MQ=255)
                                                                                                                                                  ttAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAGTAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTttat  >  2:972822/1‑149 (MQ=255)
                                                                                                                                                  ttAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTttat  >  2:1058324/1‑149 (MQ=255)
                                                                                                                                                  ttAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTttat  >  2:151038/1‑149 (MQ=255)
                                                                                                                                                  ttAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTACTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTttat  >  2:135973/1‑149 (MQ=255)
                                                                                                                                                  ttAAGTTCTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTttat  <  1:80662/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
TGGCTCTTAATTTAATTGCAATTGTCTTATGGGTTATCGTGATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTAT  >  CP000730/1113959‑1114253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.