BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	52495 =	158 (1.250)	186 (1.480) +T	5/294	6.5	57.5%	intergenic (+105/‑568)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
*	?	CP000730	= 52988	119 (0.940)	186 (1.480) +T	5/294	6.5	57.5%	intergenic (+598/‑75)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 121 total aligned reads displayed.

GGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACGT  >  CP000730/52840‑53135

ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAACTGAACGGAGGAGGCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                                                                                                                                                     >  1:696289/1‑149 (MQ=11)

ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATAAGCGTAGTAATCGCGCGAAAATc                                                                                                                                                     >  1:65540/1‑149 (MQ=17)

 gAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcg                                                                                                                                                    <  2:506665/149‑1 (MQ=32)

  aaTCGTTTGAAATTATCGTAGTAATCGCTCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTACTAATCGCGCGAAAATCGCGTGAAATAATCAGCGGCATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgg                                                                                                                                                   <  1:932471/149‑2 (MQ=11)

         tGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAGATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCGGAGCGATGGTTGGAAAACATCGTAGTAATCGCGCGAAAATagcgacacaa                                                                                                                                            >  2:41831/1‑143 (MQ=11)

             atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGAAGGAATAGCGCGAAAATCGCGTGAAATAcaa                                                                                                                                        >  2:376307/1‑147 (MQ=255)

                 tcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGAGGAATGGTTTGAGATCATAATTGTAGTCGTGTGATAATCGCGGGATATACTATggg                                                                                                                                    >  2:841504/1‑148 (MQ=11)

                     agtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGGAGAATCGTTTGAAATCATCGTAGTAGTGGCGCTAGAATCGCGTGAAAAACTagtggagaa                                                                                                                                >  2:69075/1‑141 (MQ=11)

                     agtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATGGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGGGAAATACTATGGTAGag                                                                                                                                >  2:517876/1‑148 (MQ=255)

                     agtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATGGTTTGAAATCATCGATGGAATCGCGTGAAAATCGCGGGAAGGAGGATGGTAGAc                                                                                                                                >  2:1189540/1‑149 (MQ=11)

                      gtaATCGCGCGAAGATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACg                                                                                                                               <  1:89961/149‑1 (MQ=255)

                      gtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACg                                                                                                                               <  1:88992/149‑1 (MQ=255)

                      gtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACg                                                                                                                               <  1:344622/149‑1 (MQ=255)

                         actgcgcgAAAATCGCGGGGAAGAATGAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAACCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGtt                                                                                                                            <  1:94781/146‑1 (MQ=14)

                         aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAACCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGtt                                                                                                                            <  1:975043/149‑1 (MQ=255)

                         aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCAGCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGtt                                                                                                                            <  1:578184/149‑1 (MQ=255)

                          tCGCGCGAAAATCGCGTGAAATAATCATAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGttt                                                                                                                           >  1:738410/1‑149 (MQ=255)

                            gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGa                                                                                                                         <  1:1070425/149‑1 (MQ=255)

                                 aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaaa                                                                                                                    <  1:397363/149‑1 (MQ=255)

                                     tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTaa                                                                                                                <  1:667999/149‑1 (MQ=255)

                                     tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAGCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTaa                                                                                                                <  1:263402/149‑1 (MQ=255)

                                     acacgTGAAATAATCAGAGGAATCGGTTGAAATCATCGGAGTAATCGAGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTaa                                                                                                                <  2:617576/146‑1 (MQ=255)

                                      cgcgTGAAATAATCAGAGGAATCGTTTGAAGTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGATGAATGGTTTGAGATCATCGGAGTAATAGGGCGAAAATCGCGTGAAATAGTAAGGGGGAGGGTTGGAGAAAATTAAt                                                                                                               >  2:979937/1‑149 (MQ=11)

                                        cgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTTGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATgg                                                                                                             <  1:870591/149‑1 (MQ=255)

                                         gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGa                                                                                                            <  1:619348/149‑1 (MQ=255)

                                          tgcaataatCAGAGGAATCGCTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAACTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAg                                                                                                           <  1:993243/146‑1 (MQ=255)

                                          tGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAg                                                                                                           <  1:1055671/149‑1 (MQ=255)

                                          agAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAg                                                                                                           <  1:692633/148‑1 (MQ=255)

                                           gAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTCAGGGGAATGGTTTGAAAACATCGGAGTAATCGCGCGAAAATCGCGTGAAATACGATGGTAGACGGATTGAGAAAATTAATagaga                                                                                                          >  2:575531/1‑148 (MQ=14)

                                           gAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGt                                                                                                          <  1:461161/149‑1 (MQ=255)

                                           gAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGt                                                                                                          <  2:919018/149‑1 (MQ=255)

                                             aataatCAGAGGAATCGTTTGAAATCGTAGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAGATCATCGTAGGAATCGCGCGAAAATCGCGGGAAATACTATGGTAGAGGCTTGGAGTAAATTAATAGAGTAt                                                                                                        >  2:1298821/1‑149 (MQ=17)

                                             aataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTCGACGGTTTGAGTAAATTAATGGAGTAt                                                                                                        >  2:550087/1‑149 (MQ=255)

                                             aataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAt                                                                                                        >  1:1007368/1‑149 (MQ=255)

                                             aataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAt                                                                                                        >  1:806903/1‑149 (MQ=255)

                                             aataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAt                                                                                                        >  1:1161696/1‑149 (MQ=255)

                                             aataatCAGAGGAACCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGTGCGAAAATCGCGTGAAATACGATGGTAGACGGGTTGAGTAAATTAATGGAGAAt                                                                                                        >  2:742929/1‑149 (MQ=17)

                                               aaatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAttt                                                                                                      <  1:962589/148‑1 (MQ=255)

                                                aatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGAGGAATCGTTTGAGATCATCGTAGTAATAGCGCGAAAATCGCGTGAAATACTATTGTAGACGGGTTGGGTAAATTAATGGAGAGtttt                                                                                                     >  2:235678/1‑149 (MQ=17)

                                                 atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTa                                                                                                    <  1:1160560/149‑1 (MQ=255)

                                                      gggAATCGTTTTAAATCATCGGAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATAtt                                                                                               <  2:178277/148‑1 (MQ=255)

                                                      agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTGGTAGTCGCGTGAAAATTGCGTGAAATACAATGGTAGAGGGGTTGAGTAAATTAATAGATGAtttataaatt                                                                                               >  2:754355/1‑142 (MQ=14)

                                                               ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTg                                                                                      <  1:491299/149‑1 (MQ=255)

                                                               ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTAGGGTATg                                                                                      >  2:1144400/1‑149 (MQ=255)

                                                                tGAAATCATCTAAGTAAACCCGGAAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAACTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTgg                                                                                     <  1:314950/149‑1 (MQ=21)

                                                                  aaaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTggag                                                                                   >  1:142657/1‑149 (MQ=255)

                                                                   aaTCACCGTAGAAATCGCGCGAAAATCGCGTGAAAAAACCAGATCAATCGTTTAAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATTGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTgaagg                                                                                  <  2:407837/149‑1 (MQ=21)

                                                                    atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGAGGGTTTGAGTAAATTAATGTAGTATTTTAATACTATTGGTTTggagga                                                                                 >  2:691411/1‑149 (MQ=18)

                                                                    atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTACGGGAGGATGTTAAAGATTAGGGGTTggagga                                                                                 >  2:848187/1‑149 (MQ=17)

                                                                    atcaacGTAGTAAACTCACGAAACTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATCCTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTggagga                                                                                 <  1:1140870/149‑1 (MQ=21)

                                                                     taatcGTCGTAATCGCGCGAAAGTCGCGTGAAATAAGCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATTGAGTGAAATACTTTGGCAGCCTGTTTGATTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGaa                                                                                <  1:1131078/147‑1 (MQ=18)

                                                                          gtaggaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCg                                                                           <  2:234490/149‑1 (MQ=255)

                                                                              taATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTGTGGTTTGGAGGAATTGCGTTGc                                                                       >  1:772725/1‑149 (MQ=255)

                                                                              taATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                       >  1:1074999/1‑149 (MQ=255)

                                                                              taATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTGTAATATTTATGGTTTGGGGGAATTGCGTTGc                                                                       >  1:58746/1‑149 (MQ=255)

                                                                                 tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATa                                                                    >  1:656079/1‑149 (MQ=255)

                                                                                   gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATaga                                                                  <  1:787732/149‑1 (MQ=255)

                                                                                   gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATaga                                                                  <  1:216364/149‑1 (MQ=255)

                                                                                     gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGGGTAATTTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCAttgggg                                                                >  2:554707/1‑144 (MQ=255)

                                                                                     gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAgaga                                                                <  1:185892/149‑1 (MQ=255)

                                                                                     gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAgaga                                                                >  2:181485/1‑149 (MQ=255)

                                                                                     gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATGAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAgaga                                                                >  2:169476/1‑149 (MQ=255)

                                                                                      cgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaa                                                               <  1:635443/149‑1 (MQ=255)

                                                                                        aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCTCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTGTGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                             >  1:898693/1‑149 (MQ=255)

                                                                                        aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                             <  1:602238/149‑1 (MQ=255)

                                                                                        aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                             <  1:572991/149‑1 (MQ=255)

                                                                                           aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaa                                                          <  1:726365/149‑1 (MQ=255)

                                                                                           aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaa                                                          <  1:1310926/149‑1 (MQ=255)

                                                                                           aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaa                                                          <  1:226777/149‑1 (MQ=255)

                                                                                              gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAata                                                       <  2:1007368/149‑1 (MQ=255)

                                                                                              gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAata                                                       <  1:418324/149‑1 (MQ=255)

                                                                                                  gAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAAtatata                                                   >  2:1015120/1‑149 (MQ=255)

                                                                                                  gAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAAtatata                                                   >  1:795546/1‑149 (MQ=255)

                                                                                                  gAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAATATTTTAATAGTTATGGTTTGGAGGAATTGCGTTGCTTAGAGAAAGTAAAtatata                                                   >  1:795542/1‑149 (MQ=255)

                                                                                                  gAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATAGCGTGAAGATTTCGTGAAATCCTGTGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAAtatata                                                   >  1:644444/1‑149 (MQ=38)

                                                                                                         tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGgata                                            >  2:380071/1‑149 (MQ=255)

                                                                                                            gagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGa                                         >  1:1086626/1‑149 (MQ=255)

                                                                                                              agAATCGTTTGAAATCAACGTAGTAATCGCGCGAAAATCGCTTGAAATATTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGaaa                                       <  1:841504/148‑1 (MQ=255)

                                                                                                                    gTTTGAAATCATCGTAGTAATNGNCCGNAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGGATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGa                                 <  1:882672/149‑1 (MQ=255)

                                                                                                                       tGAAATCATCGTAGTAATCGCGCGAAACTCGAGTGAAATAGTATGTGAGTCGGTTTGAGTAAATTGAAGGCTTGTTTGAATATTTAACGTCTTTAGGAAGTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGaaaa                              <  1:316330/149‑1 (MQ=255)

                                                                                                                       tGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGaaaa                              <  2:17589/149‑1 (MQ=255)

                                                                                                                        gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAg                             >  2:693596/1‑149 (MQ=255)

                                                                                                                        gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAg                             <  2:928592/149‑1 (MQ=255)

                                                                                                                          aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTGTTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAGGGa                           >  1:40939/1‑149 (MQ=255)

                                                                                                                          aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa                           <  2:1092939/149‑1 (MQ=255)

                                                                                                                          aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa                           >  1:828362/1‑149 (MQ=255)

                                                                                                                           atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGAt                          <  2:1263798/149‑1 (MQ=255)

                                                                                                                           atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGGTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAATTAAATATATAGCGGATAAGAAATAACCACACGGAt                          >  2:836576/1‑149 (MQ=38)

                                                                                                                              attgtagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGTGGGATGGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTAt                       <  1:448383/146‑1 (MQ=255)

                                                                                                                                 gtagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTa                    <  1:1131112/149‑1 (MQ=255)

                                                                                                                                  tagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGTAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTaa                   <  1:1189540/149‑1 (MQ=255)

                                                                                                                                  tagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTaa                   >  1:684137/1‑149 (MQ=255)

                                                                                                                                  tagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTaa                   <  1:176427/149‑1 (MQ=255)

                                                                                                                                  gagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTaa                   <  1:517876/148‑1 (MQ=255)

                                                                                                                                     taATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGGGTAAATTAATGGACTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAACTCACGAAAAGGATTATCTAATGa                <  1:837/149‑1 (MQ=255)

                                                                                                                                     taATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGa                >  2:975745/1‑149 (MQ=255)

                                                                                                                                     taATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGa                <  2:671688/149‑1 (MQ=255)

                                                                                                                                     taATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGGTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGAATTATCTAATGa                >  2:163298/1‑149 (MQ=255)

                                                                                                                                                 aaTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTAc    <  2:145903/149‑1 (MQ=255)

                                                                                                                                                 aaTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTAc    <  1:523975/149‑1 (MQ=255)

GGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACGT  >  CP000730/52840‑53135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.