New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	443919 =	90 (1.020)	17 (0.210)	14/242	6.4	18.3%	intergenic (‑219/+42)	USA300HOU_0417/USA300HOU_0419	transposase/hypothetical protein
	?	CP000730	443953 =	71 (0.900)					intergenic (‑253/+8)	USA300HOU_0417/USA300HOU_0419	transposase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACATCATAAGTACGTAAGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCA  >  CP000730/443781‑444057                                                                                                                                           |                                                                                                                                           acaTCATAAGTACGTAAGGAATTTTTATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTATTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCttt                                                                                                                                          >  1:785671/1‑141 (MQ=255)  catcatAAGTACGTAAGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTta                                                                                                                                         >  2:734700/1‑141 (MQ=255)   atcatAAGTACGTAAGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTtat                                                                                                                                        <  2:838979/141‑1 (MQ=255)     catAAGTACGTAAGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAg                                                                                                                                      >  1:907355/1‑141 (MQ=255)     catAAGTACGTAAGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAg                                                                                                                                      <  2:805012/141‑1 (MQ=255)      atAAGTACGTAAGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGc                                                                                                                                     >  2:776442/1‑141 (MQ=255)      atAAGTACGTAAGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGc                                                                                                                                     >  2:409213/1‑141 (MQ=255)       tAAGTACGTAAGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCa                                                                                                                                    >  2:914388/1‑141 (MQ=255)         aGTACGTAAGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCAtt                                                                                                                                  <  2:511240/141‑1 (MQ=255)           tACGTAAGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTc                                                                                                                                <  2:598/141‑1 (MQ=255)           tACGTAAGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTc                                                                                                                                <  1:219260/141‑1 (MQ=255)             cGTAAGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTg                                                                                                                              >  1:679161/1‑141 (MQ=255)             cGTAAGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTg                                                                                                                              >  2:378249/1‑141 (MQ=255)              gTAAGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTga                                                                                                                             >  1:213331/1‑141 (MQ=255)                aaGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCtaatc                                                                                                                           <  2:57957/141‑5 (MQ=255)                aaGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTgaga                                                                                                                           <  1:634211/141‑1 (MQ=255)                aaGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTgaga                                                                                                                           >  2:270219/1‑141 (MQ=255)                 aGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGAt                                                                                                                          <  2:415598/141‑1 (MQ=255)                 aGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGAt                                                                                                                          >  1:398214/1‑141 (MQ=255)                 aGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCGTGGTTTCTTGACGTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGAt                                                                                                                          <  1:751073/141‑1 (MQ=255)                  ggAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCtaatctc                                                                                                                         <  2:776793/141‑7 (MQ=255)                     aTTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCtaatctcaga                                                                                                                      <  1:495625/141‑10 (MQ=255)                       tttGATCGTTCATTGTTCTTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCtaatctcagaaa                                                                                                                    <  1:529606/141‑12 (MQ=255)                       tttGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCtaatctcagaaa                                                                                                                    <  1:178847/141‑12 (MQ=255)                       tttGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGaaa                                                                                                                    >  1:329733/1‑141 (MQ=255)                           aTCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCt                                                                                                                >  1:104466/1‑141 (MQ=255)                            tCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGTTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCta                                                                                                               >  1:216774/1‑141 (MQ=255)                            tCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCta                                                                                                               >  1:757711/1‑141 (MQ=255)                            tCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCta                                                                                                               <  1:858973/141‑1 (MQ=255)                             cGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCtat                                                                                                              <  1:380697/141‑1 (MQ=255)                                    tGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTAtaaataaa                                                                                                       >  1:273743/1‑141 (MQ=255)                                          tGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGAtt                                                                                                 <  2:999614/141‑1 (MQ=255)                                          tGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGAtt                                                                                                 <  1:513282/141‑1 (MQ=255)                                           gCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATACAGTGATTa                                                                                                >  2:768138/1‑141 (MQ=255)                                           gCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTa                                                                                                <  2:994234/141‑1 (MQ=255)                                            cTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTaa                                                                                               <  2:785671/141‑1 (MQ=255)                                               tATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAg                                                                                                                                      <  2:14969/99‑1 (MQ=255)                                               tATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAg                                                                                                                                      >  1:14969/1‑99 (MQ=255)                                               tATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGAt                                                                                            <  1:734700/141‑1 (MQ=255)                                               tATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGAt                                                                                            >  2:554329/1‑141 (MQ=255)                                                aTGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGAtt                                                                                           <  2:781019/141‑1 (MQ=255)                                                      tAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGt                                                                                     >  1:884275/1‑141 (MQ=255)                                                        gggAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGttt                                                                                   <  1:776442/141‑1 (MQ=255)                                                         ggAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTtat                                                                                                                                        <  2:237325/87‑1 (MQ=255)                                                         ggAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTtat                                                                                                                                        >  1:237325/1‑87 (MQ=255)                                                         ggAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGtttt                                                                                  >  1:475914/1‑141 (MQ=255)                                                            aTGTGCTATTGAAGGGGTTAAAGATGTTGGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCAt                                                                               >  2:520955/1‑141 (MQ=255)                                                             tgtgCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATg                                                                              <  2:710633/141‑1 (MQ=255)                                                                gCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTaa                                                                           >  2:208159/1‑141 (MQ=255)                                                                 cTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAAt                                                                          >  2:801561/1‑141 (MQ=255)                                                                 cTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAAt                                                                          <  1:228983/141‑1 (MQ=255)                                                                  tATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAAtt                                                                         <  2:346120/141‑1 (MQ=255)                                                                          atcatcattttcattGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAAt                                                                 <  1:613595/128‑1 (MQ=255)                                                                               aaaGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGAtt                                                            >  1:80122/1‑141 (MQ=255)                                                                                aaGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGCGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGAttt                                                           <  1:1006466/141‑1 (MQ=255)                                                                                aaGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGAttt                                                           >  2:142049/1‑141 (MQ=255)                                                                                aaGATGTTTGAAATGTCGTGGCTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGAttt                                                           >  1:576779/1‑141 (MQ=255)                                                                                  gATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGt                                                         <  2:128441/141‑1 (MQ=255)                                                                                  gATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGt                                                         <  2:457494/141‑1 (MQ=255)                                                                                    tGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGttt                                                       >  2:96883/1‑141 (MQ=255)                                                                                        tGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATGGCATTTCTCAGGTTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTtg                                                   <  1:463620/141‑1 (MQ=255)                                                                                        tGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAATAAATGGATTTGTTTTTtg                                                   >  2:960644/1‑141 (MQ=255)                                                                                        tGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATATAATTTAAGAAATGGATTTGttttttt                                                   >  2:696348/1‑140 (MQ=255)                                                                                           aaTGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTgg                                                >  2:500294/1‑141 (MQ=255)                                                                                           aaTGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTgg                                                >  1:850098/1‑141 (MQ=255)                                                                                             tGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGt                                              <  2:510979/141‑1 (MQ=255)                                                                                             tGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGt                                              <  2:767003/141‑1 (MQ=255)                                                                                                 ttGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTAtt                                          <  1:139205/141‑1 (MQ=255)                                                                                                    gTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTAttttt                                       <  2:104466/141‑1 (MQ=255)                                                                                                              ttATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTGGTTTTTTGTGGGTTATTTTTAATTCTGTTc                             >  2:705780/1‑141 (MQ=255)                                                                                                               tatataGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCt                            <  1:915920/141‑1 (MQ=255)                                                                                                                atataGGTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAACGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTG‑TTTTTGTGGGTTATTTTTAATTCTGTTCTTa                          >  2:987032/1‑141 (MQ=255)                                                                                                                  ataGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTaa                         >  1:119518/1‑141 (MQ=255)                                                                                                                   taGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTaaa                        <  2:477047/141‑1 (MQ=255)                                                                                                                    aGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAAt                       <  1:82042/141‑1 (MQ=255)                                                                                                                       tATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGCTTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGt                    <  1:362541/141‑1 (MQ=255)                                                                                                                       tATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGt                    >  2:1001535/1‑141 (MQ=255)                                                                                                                       tATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGt                    <  1:980044/141‑1 (MQ=255)                                                                                                                        aTGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGtt                   <  2:398214/141‑1 (MQ=255)                                                                                                                         tGAAAGAGGCCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGttt                  >  1:905603/1‑141 (MQ=255)                                                                                                                             agagGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAAt              <  2:350939/141‑1 (MQ=255)                                                                                                                               agGGCGTTGTTTTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAAttt            <  2:691798/141‑1 (MQ=255)                                                                                                                                   cGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCg        >  1:255726/1‑141 (MQ=255)                                                                                                                                    gTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGcaa       <  1:219116/141‑3 (MQ=255)                                                                                                                                    gTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGa       >  1:246203/1‑141 (MQ=255)                                                                                                                                    gTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGa       >  1:398359/1‑141 (MQ=255)                                                                                                                                     ttGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGAt      >  2:468354/1‑141 (MQ=255)                                                                                                                                     ttGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGAt      <  2:538291/141‑1 (MQ=255)                                                                                                                                        tCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTGCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGc   <  1:17990/141‑1 (MQ=255)                                                                                                                                         ccTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCa  >  1:453790/1‑141 (MQ=255)                                                                                                                                           |                                                                                                                                           ACATCATAAGTACGTAAGGAATTTTGATCGTTCATTGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCA  >  CP000730/443781‑444057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.