New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	443919 =	90 (1.020)	17 (0.210)	14/242	6.4	18.3%	intergenic (‑219/+42)	USA300HOU_0417/USA300HOU_0419	transposase/hypothetical protein
	?	CP000730	443953 =	71 (0.900)					intergenic (‑253/+8)	USA300HOU_0417/USA300HOU_0419	transposase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAGCTGCTTCTTTTGACAAAGTAATAGA  >  CP000730/443816‑444092                                                                                                                                          |                                                                                                                                            tGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTAtaaataaa                                                                                                                                          >  1:273743/1‑141 (MQ=255)       tGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGAtt                                                                                                                                    <  2:999614/141‑1 (MQ=255)       tGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGAtt                                                                                                                                    <  1:513282/141‑1 (MQ=255)        gCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATACAGTGATTa                                                                                                                                   >  2:768138/1‑141 (MQ=255)        gCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTa                                                                                                                                   <  2:994234/141‑1 (MQ=255)         cTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTaa                                                                                                                                  <  2:785671/141‑1 (MQ=255)            tATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGAt                                                                                                                               <  1:734700/141‑1 (MQ=255)            tATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGAt                                                                                                                               >  2:554329/1‑141 (MQ=255)             aTGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGAtt                                                                                                                              <  2:781019/141‑1 (MQ=255)                   tAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGt                                                                                                                        >  1:884275/1‑141 (MQ=255)                     gggAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGttt                                                                                                                      <  1:776442/141‑1 (MQ=255)                      ggAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGtttt                                                                                                                     >  1:475914/1‑141 (MQ=255)                         aTGTGCTATTGAAGGGGTTAAAGATGTTGGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCAt                                                                                                                  >  2:520955/1‑141 (MQ=255)                          tgtgCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATg                                                                                                                 <  2:710633/141‑1 (MQ=255)                             gCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTaa                                                                                                              >  2:208159/1‑141 (MQ=255)                              cTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAAt                                                                                                             >  2:801561/1‑141 (MQ=255)                              cTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAAt                                                                                                             <  1:228983/141‑1 (MQ=255)                               tATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAAtt                                                                                                            <  2:346120/141‑1 (MQ=255)                                       atcatcattttcattGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAAt                                                                                                    <  1:613595/128‑1 (MQ=255)                                            aaaGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGAtt                                                                                               >  1:80122/1‑141 (MQ=255)                                             aaGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGCGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGAttt                                                                                              <  1:1006466/141‑1 (MQ=255)                                             aaGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGAttt                                                                                              >  2:142049/1‑141 (MQ=255)                                             aaGATGTTTGAAATGTCGTGGCTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGAttt                                                                                              >  1:576779/1‑141 (MQ=255)                                               gATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGt                                                                                            <  2:457494/141‑1 (MQ=255)                                               gATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGt                                                                                            <  2:128441/141‑1 (MQ=255)                                                 tGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGttt                                                                                          >  2:96883/1‑141 (MQ=255)                                                     tGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATGGCATTTCTCAGGTTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTtg                                                                                      <  1:463620/141‑1 (MQ=255)                                                     tGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAATAAATGGATTTGTTTTTtg                                                                                      >  2:960644/1‑141 (MQ=255)                                                     tGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATATAATTTAAGAAATGGATTTGttttttt                                                                                      >  2:696348/1‑140 (MQ=255)                                                        aaTGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTgg                                                                                   >  2:500294/1‑141 (MQ=255)                                                        aaTGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTgg                                                                                   >  1:850098/1‑141 (MQ=255)                                                          tGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGt                                                                                 <  2:510979/141‑1 (MQ=255)                                                          tGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGt                                                                                 <  2:767003/141‑1 (MQ=255)                                                              ttGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTAtt                                                                             <  1:139205/141‑1 (MQ=255)                                                                 gTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTAttttt                                                                          <  2:104466/141‑1 (MQ=255)                                                                           ttATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTGGTTTTTTGTGGGTTATTTTTAATTCTGTTc                                                                >  2:705780/1‑141 (MQ=255)                                                                            tatataGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCt                                                               <  1:915920/141‑1 (MQ=255)                                                                             atataGGTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAACGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTG‑TTTTTGTGGGTTATTTTTAATTCTGTTCTTa                                                             >  2:987032/1‑141 (MQ=255)                                                                               ataGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTaa                                                            >  1:119518/1‑141 (MQ=255)                                                                                taGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTaaa                                                           <  2:477047/141‑1 (MQ=255)                                                                                 aGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAAt                                                          <  1:82042/141‑1 (MQ=255)                                                                                    tATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGCTTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGt                                                       <  1:362541/141‑1 (MQ=255)                                                                                    tATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGt                                                       <  1:980044/141‑1 (MQ=255)                                                                                    tATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGt                                                       >  2:1001535/1‑141 (MQ=255)                                                                                     aTGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGtt                                                      <  2:398214/141‑1 (MQ=255)                                                                                      tGAAAGAGGCCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGttt                                                     >  1:905603/1‑141 (MQ=255)                                                                                          agagGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAAt                                                 <  2:350939/141‑1 (MQ=255)                                                                                            agGGCGTTGTTTTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAAttt                                               <  2:691798/141‑1 (MQ=255)                                                                                                cGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCg                                           >  1:255726/1‑141 (MQ=255)                                                                                                 gTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGcaa                                          <  1:219116/141‑3 (MQ=255)                                                                                                 gTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGa                                          >  1:246203/1‑141 (MQ=255)                                                                                                 gTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGa                                          >  1:398359/1‑141 (MQ=255)                                                                                                  ttGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGAt                                         <  2:538291/141‑1 (MQ=255)                                                                                                  ttGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGAt                                         >  2:468354/1‑141 (MQ=255)                                                                                                     tCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTGCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGc                                      <  1:17990/141‑1 (MQ=255)                                                                                                      ccTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCa                                     >  1:453790/1‑141 (MQ=255)                                                                                                         ttATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGGTTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAACTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAat                                  <  1:744117/141‑1 (MQ=255)                                                                                                         tcaatccATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAat                                  <  1:660163/135‑1 (MQ=255)                                                                                                          tataGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAata                                 <  2:177391/141‑1 (MQ=255)                                                                                                           ataGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAatat                                <  1:681450/141‑1 (MQ=255)                                                                                                               cATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATa                            >  2:473663/1‑141 (MQ=255)                                                                                                                aTTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAg                           >  2:666577/1‑141 (MQ=255)                                                                                                                  ttCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAgct                         <  1:475164/141‑1 (MQ=255)                                                                                                                  ttCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAgct                         >  1:39101/1‑141 (MQ=255)                                                                                                                  ttCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAgct                         <  2:407889/141‑1 (MQ=255)                                                                                                                  ttCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAgct                         <  2:398359/141‑1 (MQ=255)                                                                                                                    ctaatctcaGAAATGCTATGAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTCGTGGGTTACTTTTCATCTTGTTCTTACATGGTTTGCATTTTGCGATTGCAAATATGATAgctgc                       >  1:867967/9‑141 (MQ=255)                                                                                                                     taatctcaGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGt                                                                                            >  1:649626/8‑71 (MQ=255)                                                                                                                     taatctcaGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGt                                                                                            <  2:649626/64‑1 (MQ=255)                                                                                                                     taatctcaGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAgctgct                      >  1:439289/8‑141 (MQ=255)                                                                                                                     tGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAgctgct                      >  2:105568/1‑141 (MQ=255)                                                                                                                     tGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAgctgct                      >  2:1009117/1‑141 (MQ=255)                                                                                                                      aatctcaGAAATGCTATAAATAAAGTGATTAAGATTTTTTTTTTTCATTTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAGCTGctt                     >  2:691827/7‑141 (MQ=255)                                                                                                                       atctcaGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGAttt                                                                                              <  1:678771/62‑1 (MQ=255)                                                                                                                       atctcaGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGAttt                                                                                              >  2:678771/6‑67 (MQ=255)                                                                                                                       atctcaGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTATATGGTTTGAATTGTGCTATTGCAAATATGATAGCTGcttc                    >  1:970852/6‑141 (MQ=255)                                                                                                                       atctcaGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGCATTTTGCGATTGCAAATATGCTAgctgctcc                    >  2:569491/6‑139 (MQ=255)                                                                                                                        gaTTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAGCTGcttct                   >  2:872640/1‑141 (MQ=255)                                                                                                                           tAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAGCTGCTTCtttt                <  1:377860/141‑1 (MQ=255)                                                                                                                           tAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAGCTGCTTCtttt                >  1:335981/1‑141 (MQ=255)                                                                                                                             gAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTGTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAGCTGCTTCTTTTGa              >  2:623753/1‑141 (MQ=255)                                                                                                                                aTGCTATAAATAAAGTGATTAAGATTTTTTTTTTTTTTTTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAGCTGCTTCTTTTGACaa           >  2:494743/1‑141 (MQ=255)                                                                                                                                  gCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATgg                                                        >  1:725316/1‑94 (MQ=255)                                                                                                                                  gCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATgg                                                        <  2:725316/94‑1 (MQ=255)                                                                                                                                  gCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAGCTGCTTCTTTTGACAAAg         >  1:33029/1‑141 (MQ=255)                                                                                                                                      taaataaaGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAGCTGCTTCTTTTGACAAAGTAAt     <  1:96883/141‑1 (MQ=255)                                                                                                                                      taaataaaGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAGCTGCTTCTTTTGACAAAGTAAt     <  1:737318/141‑1 (MQ=255)                                                                                                                                       aaataaaGTGATTAAGTTTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAGCTGCTTCTTTTGACAAAGTAATa    <  2:798726/141‑1 (MQ=255)                                                                                                                                         ataaaGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAGCTGCTTCTTTTGACAAAGTAATAGa  <  2:119518/141‑1 (MQ=255)                                                                                                                                         ataaaGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAGCTGCTTCTTTTGACAAAGTAATAGa  <  1:878663/141‑1 (MQ=255)                                                                                                                                          |                                                                                                                                            TGTTATTGCTTTATGTTTTAGGGAATGTGCTATTGAAGGGGTTAAAGATGTTTGAAATGTCTTGGTTTCTTGACTTATATAGTTATGAAAGAGGGCGTTGTCCTTTATAGCATTTCTGAGATTAGAAATGCTATAAATAAAGTGATTAAGATTTTTTGTTTTCATGTAATTTAAGAAATGGATTTGTTTTTTGTGGGTTATTTTTAATTCTGTTCTTAAATGGTTTGAATTTTGCGATTGCAAATATGATAGCTGCTTCTTTTGACAAAGTAATAGA  >  CP000730/443816‑444092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.