New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1103184	40 (1.050)	5 (0.140)	5/260	4.4	11.8%	coding (706/1113 nt)	pdhA	pyruvate dehydrogenase (acetyl‑transferring) alpha subunit
	?	CP000730	= 1103214	36 (0.980)					coding (736/1113 nt)	pdhA	pyruvate dehydrogenase (acetyl‑transferring) alpha subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTGCAGCAGCTTATAAAGCACCTGCAATTTTCGTTATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1103043‑1103184 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agttgCTTGATATACAGCTAACGCATCCATACCATCAACTTGGATACCAGGAATACCTACAGCAATTGCTTTTTGAGCTAATGTTTCAGCAGCAGTTTGCTTGCTTCTTGGTGTTGAAATTGCATAGTTATTGTTTTGAATAAC  <  CP000730/1103214‑1103076                                                                                                                                                                                                                                                                                           TTTGCAGCAGCTTATAAAGCACCTGCAATTTTCGTTATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTT                                                                                                                                              <  1:68483/141‑1                                     ATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGCTTGATATACAGCTAACGCATCCATACCATCAACT                                                                                                          <  1:103427/141‑1                                               ATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGCTTGATATACAGCTAACGCATCCATACCA                                                                                                                <  1:368596/125‑1                                               ATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGCTTGATATACAGCTAACGCATCCATACCA                                                                                                                >  2:368596/1‑125                                                                        AAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGCTTGATATACAGCTAACGCATCCATACCATCAAC                                                                                                           >  1:427584/1‑105                                                                        AAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGCTTGATATACAGCTAACGCATCCATACCATCAAC                                                                                                           <  2:427584/105‑1                                                                                                                                             TGCTTGATATACAGCTAACGCATCCATACCATCAACTTGGATACCAGGAATACCTACAGCAATTGCTTTTTGAGCTAATGTTTCAGCAGCAGTTTGCTTGCTTCTTGGTGTTGAAATTGCATAGTTATTGTTTTGAATAAC  <  1:150829/141‑1                                                                                                                                             TGCTTGATATACAGCTAACGCATCCATACCATCAACTTGGATACCAGGAATACCTACAGCAATTGCTTTTTGAGCTAATGTTTCAGCAGCAGTTTGCTTGCTTCTTGGTGTTGAAATTGCATAGTTATTGTTTTGAATAAC  <  2:198704/141‑1                                                                                                                                                                                                                                                                                           TTTGCAGCAGCTTATAAAGCACCTGCAATTTTCGTTATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1103043‑1103184 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agttgCTTGATATACAGCTAACGCATCCATACCATCAACTTGGATACCAGGAATACCTACAGCAATTGCTTTTTGAGCTAATGTTTCAGCAGCAGTTTGCTTGCTTCTTGGTGTTGAAATTGCATAGTTATTGTTTTGAATAAC  <  CP000730/1103214‑1103076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.