New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1103184	40 (1.050)	5 (0.140)	5/260	4.4	11.8%	coding (706/1113 nt)	pdhA	pyruvate dehydrogenase (acetyl‑transferring) alpha subunit
	?	CP000730	= 1103214	36 (0.980)					coding (736/1113 nt)	pdhA	pyruvate dehydrogenase (acetyl‑transferring) alpha subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAACTCGTTACAGAACTTCAGACGAAGATGCT  >  CP000730/1103076‑1103348                                                                                                                                           |                                                                                                                                       gTTATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCa                                                                                                                                      >  1:150829/1‑141 (MQ=255) gTTATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCa                                                                                                                                      >  2:198704/1‑141 (MQ=255)       cAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTaaa                                                                                                                                >  1:289377/1‑141 (MQ=255)          aaCAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAaagaa                                                                                                                             >  1:326294/1‑141 (MQ=255)              aTAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAGGCAATTGCAGTAGTTATTCCTGGTATCCAAGTTGATGATATGCATCCGTTAGCTGTATAGCAAGCAACTAAAGAAacac                                                                                                                         >  2:386911/1‑141 (MQ=255)              aTAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCAc                                                                                                                         >  2:387042/1‑141 (MQ=255)              aTAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCAc                                                                                                                         >  1:386523/1‑141 (MQ=255)                aaCTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGt                                                                                                                       >  2:52664/1‑141 (MQ=255)                      gCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACcgc                                                                                                                 >  2:437114/1‑141 (MQ=255)                       cAATTTCAACACCAAGAAGCGAGCAAACTGCTCCTCAAACATTAGCTCAAAAAACAATTGCTGTAGGTATTCCTGGTATCCAAGTCGATGGTAAGGCGGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACcgcg                                                                                                                <  2:108714/141‑1 (MQ=255)                       cAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGAccagt                                                                                                                <  2:340349/141‑4 (MQ=255)                             cAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTg                                                                                                          >  2:390180/1‑141 (MQ=255)                                   cAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTg                                                                                                    <  1:35335/141‑1 (MQ=255)                                         gcaagcaaACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAgcga                                                                                              >  1:131328/1‑138 (MQ=255)                                               aaaCTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTGTTCCTGGTATGAAAGTTGATGGTATGGATGAGTTAGCTGTATAGCAAGCAAATAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGATCCAACAt                                                                                        >  1:42588/1‑141 (MQ=255)                                               aaaCTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACAt                                                                                        <  2:279402/141‑1 (MQ=255)                                                     ctgctgAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTg                                                                                  <  1:392533/141‑1 (MQ=255)                                                                 tAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACat                                                                      >  1:275870/1‑141 (MQ=255)                                                                         aaaGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTAt                                                              <  1:437114/141‑1 (MQ=255)                                                                                ttGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACAt                                                                                        <  2:399317/108‑1 (MQ=255)                                                                                ttGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACAt                                                                                        >  1:399317/1‑108 (MQ=255)                                                                                ttGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTc                                                       >  1:122324/1‑141 (MQ=255)                                                                                 tGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCa                                                      >  1:156380/1‑141 (MQ=255)                                                                                     gTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACa                                                  >  1:3006/1‑141 (MQ=255)                                                                                        ggTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGACACTATGACATATCGTTATGGTCCTCATACAATg                                               >  2:45183/1‑141 (MQ=255)                                                                                             tCCTGGTATCCAAGTTGGTGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTgg                                          <  1:271445/141‑1 (MQ=255)                                                                                                      ccAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATcc                                 <  1:226655/141‑1 (MQ=255)                                                                                                      ccAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATcc                                 <  1:226663/141‑1 (MQ=255)                                                                                                         aGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAAc                              >  2:444996/1‑141 (MQ=255)                                                                                                         aGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAAc                              >  2:444988/1‑141 (MQ=255)                                                                                                         aGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAAc                              >  2:445008/1‑141 (MQ=255)                                                                                                             gATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAACTCGt                          >  1:98903/1‑141 (MQ=255)                                                                                                             gATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAACTCGt                          >  1:99002/1‑141 (MQ=255)                                                                                                             gATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATAGTCCTCATACAATGGATGGTGACGATCCAACTCGt                          >  2:329027/1‑141 (MQ=255)                                                                                                                            ttAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGGCCTCATACAATGGCTGGTGACGATCCAACTCGTTACAGAACTTCAGAc           >  2:1966/1‑141 (MQ=255)                                                                                                                                cTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAACTCGTTACAGAACTTCAGACGAAg       >  2:358123/1‑141 (MQ=255)                                                                                                                                    atatCAAGAAACTAAAGAAGCACGTGACAGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAACTCGTTACAGAACTTCAGACGAAGATGc   <  2:109052/141‑1 (MQ=255)                                                                                                                                     tatCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAACTCGTTACAGAACTTCAGACGAAGATGCt  <  2:282024/141‑1 (MQ=255)                                                                                                                                           |                                                                                                                                       GTTATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAACTCGTTACAGAACTTCAGACGAAGATGCT  >  CP000730/1103076‑1103348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.