New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1103184	40 (1.050)	5 (0.140)	5/260	4.4	11.8%	coding (706/1113 nt)	pdhA	pyruvate dehydrogenase (acetyl‑transferring) alpha subunit
	?	CP000730	= 1103214	36 (0.980)					coding (736/1113 nt)	pdhA	pyruvate dehydrogenase (acetyl‑transferring) alpha subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCTTATAAAGCACCTGCAATTTTCGTTATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAACTCGT  >  CP000730/1103052‑1103324                                                                                                                                     |                                                                                                                                             gcTTATAAAGCACCTGCAATTTTCGTTATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATg                                                                                                                                      >  1:282024/1‑141 (MQ=255)                gCAATTTTCGTTATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGta                                                                                                                       >  2:226663/1‑141 (MQ=255)                gCAATTTTCGTTATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGta                                                                                                                       >  2:226655/1‑141 (MQ=255)                     tttCGTTATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTCTTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCa                                                                                                                  <  1:370490/141‑1 (MQ=255)                         gTTATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCa                                                                                                              >  2:198704/1‑141 (MQ=255)                         gTTATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCa                                                                                                              >  1:150829/1‑141 (MQ=255)                               cAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTaaa                                                                                                        >  1:289377/1‑141 (MQ=255)                                  aaCAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAaagaa                                                                                                     >  1:326294/1‑141 (MQ=255)                                      aTAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAGGCAATTGCAGTAGTTATTCCTGGTATCCAAGTTGATGATATGCATCCGTTAGCTGTATAGCAAGCAACTAAAGAAacac                                                                                                 >  2:386911/1‑141 (MQ=255)                                      aTAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCAc                                                                                                 >  1:386523/1‑141 (MQ=255)                                      aTAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCAc                                                                                                 >  2:387042/1‑141 (MQ=255)                                        aaCTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGt                                                                                               >  2:52664/1‑141 (MQ=255)                                              gCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACcgc                                                                                         >  2:437114/1‑141 (MQ=255)                                               cAATTTCAACACCAAGAAGCGAGCAAACTGCTCCTCAAACATTAGCTCAAAAAACAATTGCTGTAGGTATTCCTGGTATCCAAGTCGATGGTAAGGCGGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACcgcg                                                                                        <  2:108714/141‑1 (MQ=255)                                               cAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGAccagt                                                                                        <  2:340349/141‑4 (MQ=255)                                                     cAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTg                                                                                  >  2:390180/1‑141 (MQ=255)                                                           cAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTg                                                                            <  1:35335/141‑1 (MQ=255)                                                                 gcaagcaaACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAgcga                                                                      >  1:131328/1‑138 (MQ=255)                                                                       aaaCTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTGTTCCTGGTATGAAAGTTGATGGTATGGATGAGTTAGCTGTATAGCAAGCAAATAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGATCCAACAt                                                                >  1:42588/1‑141 (MQ=255)                                                                       aaaCTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACAt                                                                <  2:279402/141‑1 (MQ=255)                                                                             ctgctgAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTg                                                          <  1:392533/141‑1 (MQ=255)                                                                                         tAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACat                                              >  1:275870/1‑141 (MQ=255)                                                                                            cTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATgg                                                                                                                                     <  2:434040/51‑1 (MQ=255)                                                                                            cTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATgg                                                                                                                                     >  1:434040/1‑51 (MQ=255)                                                                                                 aaaGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTAt                                      <  1:437114/141‑1 (MQ=255)                                                                                                        ttGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACAt                                                                >  1:399317/1‑108 (MQ=255)                                                                                                        ttGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACAt                                                                <  2:399317/108‑1 (MQ=255)                                                                                                        ttGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTc                               >  1:122324/1‑141 (MQ=255)                                                                                                         tGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCa                              >  1:156380/1‑141 (MQ=255)                                                                                                             gTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACa                          >  1:3006/1‑141 (MQ=255)                                                                                                                ggTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGACACTATGACATATCGTTATGGTCCTCATACAATg                       >  2:45183/1‑141 (MQ=255)                                                                                                                     tCCTGGTATCCAAGTTGGTGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTgg                  <  1:271445/141‑1 (MQ=255)                                                                                                                              ccAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATcc         <  1:226663/141‑1 (MQ=255)                                                                                                                              ccAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATcc         <  1:226655/141‑1 (MQ=255)                                                                                                                                 aGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAAc      >  2:445008/1‑141 (MQ=255)                                                                                                                                 aGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAAc      >  2:444988/1‑141 (MQ=255)                                                                                                                                 aGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAAc      >  2:444996/1‑141 (MQ=255)                                                                                                                                     gATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAACTCGt  >  1:99002/1‑141 (MQ=255)                                                                                                                                     gATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAACTCGt  >  1:98903/1‑141 (MQ=255)                                                                                                                                     gATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATAGTCCTCATACAATGGATGGTGACGATCCAACTCGt  >  2:329027/1‑141 (MQ=255)                                                                                                                                     |                                                                                                                                             GCTTATAAAGCACCTGCAATTTTCGTTATTCAAAACAATAACTATGCAATTTCAACACCAAGAAGCAAGCAAACTGCTGCTGAAACATTAGCTCAAAAAGCAATTGCTGTAGGTATTCCTGGTATCCAAGTTGATGGTATGGATGCGTTAGCTGTATATCAAGCAACTAAAGAAGCACGTGACCGCGCAGTTGCAGGTGAAGGTCCAACATTAATTGAAACTATGACATATCGTTATGGTCCTCATACAATGGCTGGTGACGATCCAACTCGT  >  CP000730/1103052‑1103324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.