New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2494782 =	24 (0.630)	3 (0.090)	3/248	5.2	10.7%	intergenic (+1/+62)	USA300HOU_2358/USA300HOU_2359	hypothetical protein/hypothetical membrane protein
	?	CP000730	2494828 =	28 (0.800)					intergenic (+47/+16)	USA300HOU_2358/USA300HOU_2359	hypothetical protein/hypothetical membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATGATTTTTGGCGCTGTATCAAGTTTAGTTTCAGCTATTGTTAGAAAACATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2494925‑2494782 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatagctattATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGTACTATTTAATTCAATATGAT  >  CP000730/2494828‑2494968                                                                                                                                                                                                                                                                                               TATGATTTTTGGCGCTGTATCAAGTTTAGTTTCAGCTATTGTTAGAAAACATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCT                                                                                                                                                  <  2:290801/141‑1    GATTTTTGGCGCTGTATCAAGTTTAGTTTCAGCTATTGTTAGAAAACATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATT                                                                                                                                               >  1:340442/1‑141                                                                                                AATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAA                                                   >  1:395369/1‑141                                                                                                                   GTTTGTAGCGAGCGTCATGGTATAGCTATTATTTCTATTTATTAAATTATGAC                                                                                                                        >  2:203212/1‑53                                                                                                                   GTTTGTAGCGAGCGTCATGGTATAGCTATTATTTCTATTTATTAAATTATGAC                                                                                                                        <  1:203212/53‑1                                                                                                                                       TATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGTACTATTTAAT            <  2:229618/141‑1                                                                                                                                        ATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGTACTATTTAATT           >  2:348794/1‑141                                                                                                                                        ATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGAACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGTACTATTTAATT           >  1:438106/1‑141                                                                                                                                           GCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGTACTATTTAATTCAA        >  2:379685/1‑141                                                                                                                                               TTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGTACTATTTAATTCAATATG    <  2:359419/141‑1                                                                                                                                               TTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCC‑‑TAAACATCCACATTGTACTATTTAATTCAATATGAT  >  2:188216/1‑141                                                                                                                                                                                                                                                                                               TATGATTTTTGGCGCTGTATCAAGTTTAGTTTCAGCTATTGTTAGAAAACATAGCACAAAACGTACTGAAGTGCCGTCATAATTTAATAAATAGAAATAATAGCTATACAAGACGTTTGTAGCGAGCGTCATGGTATAGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2494925‑2494782 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtatagctattATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGTACTATTTAATTCAATATGAT  >  CP000730/2494828‑2494968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.