| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2494782 = | 24 (0.630) | 3 (0.090) | 3/248 | 5.2 | 10.7% | intergenic (+1/+62) | USA300HOU_2358/USA300HOU_2359 | hypothetical protein/hypothetical membrane protein |
| ? | CP000730 | 2494828 = | 28 (0.800) | intergenic (+47/+16) | USA300HOU_2358/USA300HOU_2359 | hypothetical protein/hypothetical membrane protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATC > CP000730/2494643‑2494922 | aTCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATGTGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACaaataaaa > 1:82527/1‑141 (MQ=255)aTCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATGTGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACaaataaaa > 1:82311/1‑141 (MQ=255) ttttCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACaaataaaat < 2:263232/129‑1 (MQ=255) ttttCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACaaataaaat > 1:263232/1‑129 (MQ=255) aTTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAAc < 2:69175/141‑1 (MQ=255) tataCCTATTATAACAGTGACAAAAAAGCGAAGAGATGACACAACCAAATTCGTTTGAGCACTTAGTATGACAGCTAAAATAACTTTACAGCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGt < 1:332776/141‑1 (MQ=255) tataACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAg > 1:229618/1‑141 (MQ=255) aCAGTGAAAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCtat < 2:257691/141‑1 (MQ=255) cAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCt > 2:340442/1‑141 (MQ=255) aaaaaaGCGAAGATATGACACAACTGTATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCta < 1:300351/141‑1 (MQ=255) aaaaaaGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCta > 1:416367/1‑141 (MQ=255) aaaaaaGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCta > 1:359419/1‑141 (MQ=255) gAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATCACGGCACTCCa > 2:297042/1‑141 (MQ=255) aaTTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGAACTTCAg > 2:96888/1‑141 (MQ=255) ggTTTAGCACATAGTATGACAGATAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGATAGATAAAAAAGATATGTCTAGACAACAAATATATTTATTACATAATGACGGCAATTAAGTCCGt > 1:242863/1‑141 (MQ=255) ttAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGtttt > 2:374684/1‑141 (MQ=255) ttAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGtttt > 2:374608/1‑141 (MQ=255) aTGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAACCGTCTTGTATAGCTATCCTTTCTATTTATTCAATTATGCCGGCACTTCAGTACGATTTATGATATGtttt > 1:355431/1‑141 (MQ=255) tGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTc > 2:277296/1‑141 (MQ=255) tGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTc > 1:132989/1‑141 (MQ=255) gCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCGCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACa > 1:110494/1‑141 (MQ=255) tCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGaaactaaact < 2:133751/141‑1 (MQ=255) cAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATAACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACtt < 2:251060/141‑1 (MQ=255) ataCAAATAAGATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACCGCACTTCATTACGTTTTGTGCTATGTTTTCTAACATTTTCTGAAACTAAACGTGATACAgc < 2:242863/141‑1 (MQ=255) aataGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATc < 1:340442/141‑1 (MQ=255) | ATCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATC > CP000730/2494643‑2494922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |