New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2494782 =	24 (0.630)	3 (0.090)	3/248	5.2	10.7%	intergenic (+1/+62)	USA300HOU_2358/USA300HOU_2359	hypothetical protein/hypothetical membrane protein
	?	CP000730	2494828 =	28 (0.800)					intergenic (+47/+16)	USA300HOU_2358/USA300HOU_2359	hypothetical protein/hypothetical membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGTACTATTTAATTCAATATGAT  >  CP000730/2494693‑2494968                                                                                                                                        |                                                                                                                                             cAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCt                                                                                                                                         >  2:340442/1‑141 (MQ=255)  aaaaaaGCGAAGATATGACACAACTGTATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCta                                                                                                                                        <  1:300351/141‑1 (MQ=255)  aaaaaaGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCta                                                                                                                                        >  1:416367/1‑141 (MQ=255)  aaaaaaGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCta                                                                                                                                        >  1:359419/1‑141 (MQ=255)                           gAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATCACGGCACTCCa                                                                                                               >  2:297042/1‑141 (MQ=255)                            aaTTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGAACTTCAg                                                                                                              >  2:96888/1‑141 (MQ=255)                                 ggTTTAGCACATAGTATGACAGATAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGATAGATAAAAAAGATATGTCTAGACAACAAATATATTTATTACATAATGACGGCAATTAAGTCCGt                                                                                                         >  1:242863/1‑141 (MQ=255)                                    ttAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGtttt                                                                                                      >  2:374684/1‑141 (MQ=255)                                    ttAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGtttt                                                                                                      >  2:374608/1‑141 (MQ=255)                                                aTGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAACCGTCTTGTATAGCTATCCTTTCTATTTATTCAATTATGCCGGCACTTCAGTACGATTTATGATATGtttt                                                                                          >  1:355431/1‑141 (MQ=255)                                                 tGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTc                                                                                         >  1:132989/1‑141 (MQ=255)                                                 tGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTc                                                                                         >  2:277296/1‑141 (MQ=255)                                                      gCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCGCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACa                                                                                    >  1:110494/1‑141 (MQ=255)                                                                       tCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGaaactaaact                                                                   <  2:133751/141‑1 (MQ=255)                                                                        cAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATAACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACtt                                                                  <  2:251060/141‑1 (MQ=255)                                                                                ataCAAATAAGATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACCGCACTTCATTACGTTTTGTGCTATGTTTTCTAACATTTTCTGAAACTAAACGTGATACAgc                                                          <  2:242863/141‑1 (MQ=255)                                                                                          aataGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATc                                                <  1:340442/141‑1 (MQ=255)                                                                                             aGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATa                                             >  2:290801/1‑141 (MQ=255)                                                                                                           gctcgctACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGTGCCAAAAATCATAAACCCTATAAACAt                               >  2:62004/1‑141 (MQ=255)                                                                                                             tcgctACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATcc                             >  1:272045/1‑141 (MQ=255)                                                                                                              cgctACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATTATAAACAATATAAAAATCca                            >  2:431444/1‑141 (MQ=255)                                                                                                              cgctACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCca                            >  1:309868/1‑141 (MQ=255)                                                                                                               gctACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGaaac                                                                         <  1:420679/95‑1 (MQ=255)                                                                                                               gctACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGaaac                                                                         >  2:420679/1‑95 (MQ=255)                                                                                                               gctACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCcac                           <  2:416367/141‑1 (MQ=255)                                                                                                                  aCAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACAtt                        <  1:380993/141‑1 (MQ=255)                                                                                                                    aaaCGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGt                      <  1:184638/141‑1 (MQ=255)                                                                                                                        gTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGTACTa                  <  2:243471/141‑1 (MQ=255)                                                                                                                              tataGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGTACTATTTAAt            <  2:229618/141‑1 (MQ=255)                                                                                                                               ataGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGTACTATTTAAtt           >  2:348794/1‑141 (MQ=255)                                                                                                                               ataGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGAACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGTACTATTTAAtt           >  1:438106/1‑141 (MQ=255)                                                                                                                                  gCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGTACTATTTAATTCaa        >  2:379685/1‑141 (MQ=255)                                                                                                                                      ttattTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGTACTATTTAATTCAATatg    <  2:359419/141‑1 (MQ=255)                                                                                                                                      ttattTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCC‑‑TAAACATCCACATTGTACTATTTAATTCAATatgat  >  2:188216/1‑141 (MQ=255)                                                                                                                                        |                                                                                                                                             CAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAATCATAAACCCTATAAACATCCACATTGTACTATTTAATTCAATATGAT  >  CP000730/2494693‑2494968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.