New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	932460 =	36 (0.950)	3 (0.090)	3/246	5.2	8.5%	intergenic (+6/+257)	dltD/nifU	D‑alanine transfer protein DltD/possible NifU family protein
	?	CP000730	932506 =	32 (0.920)					intergenic (+52/+211)	dltD/nifU	D‑alanine transfer protein DltD/possible NifU family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAAGAATATGAAAAATATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACT  >  CP000730/932323‑932599                                                                                                                                          |                                                                                                                                            aaaGAATATGAAAAATATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAAt                                                                                                                                          <  1:141539/141‑1 (MQ=255)           aaaaaTATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAAc                                                                                                                                >  1:313829/1‑141 (MQ=255)           aaaaaTATGTTATCAGTGATGCCGTACACATCGATTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTATATAAACCTAAAAATTAAAATACAAATAGCACATAAc                                                                                                                                <  2:46301/141‑1 (MQ=255)            aaaaTACGTTATCCGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTCTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCAAAACATGACGCAAAAAAACATAAAAATTAAAATACAAATAGCACATAACt                                                                                                                               <  2:265384/141‑1 (MQ=255)                     tATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGAttt                                                                                                                      <  2:101062/141‑1 (MQ=255)                             aTGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAg                                                                                                              >  2:326252/1‑141 (MQ=255)                             aTGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAg                                                                                                              >  1:241570/1‑141 (MQ=255)                              tGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGc                                                                                                             >  2:123222/1‑141 (MQ=255)                                ccGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGt                                                                                                           <  2:336798/141‑1 (MQ=255)                                        aTCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTa                                                                                                   >  2:414214/1‑141 (MQ=255)                                             ttGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTAttttt                                                                                              <  2:364420/141‑1 (MQ=255)                                                   aGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAttt                                                                                        <  1:248015/141‑1 (MQ=255)                                                    ggTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAtttt                                                                                       >  2:162494/1‑141 (MQ=255)                                                    ggTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAtttt                                                                                       >  2:32829/1‑141 (MQ=255)                                                          gTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGATCTTTTTATATTTTAAAttt                                                                                 >  1:339518/1‑141 (MQ=255)                                                             tataTGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCat                                                                              <  2:404159/141‑1 (MQ=255)                                                                               gCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAatat                                                            >  1:315346/1‑141 (MQ=255)                                                                                      atatGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTg                                                     <  1:213660/141‑1 (MQ=255)                                                                                        atGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGa                                                   <  1:380217/141‑1 (MQ=255)                                                                                           aaaGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGatat                                                <  1:168548/141‑1 (MQ=255)                                                                                            aaGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATAtg                                               <  2:79181/141‑1 (MQ=255)                                                                                             aGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAGAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATAtgt                                              <  2:281738/141‑1 (MQ=255)                                                                                             aGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAtttt                                                                                       <  1:318313/100‑1 (MQ=255)                                                                                             aGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAtttt                                                                                       >  2:318313/1‑100 (MQ=255)                                                                                                tGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGc                                           >  2:297971/1‑141 (MQ=255)                                                                                                   aCCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCaat                                        >  1:386219/1‑141 (MQ=255)                                                                                                   aCCACAACCTGAAGTAGATAAACCTAAAAATTAAAACACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCaat                                        >  2:64117/1‑141 (MQ=255)                                                                                                      acaACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATAtg                                               <  2:318754/131‑1 (MQ=255)                                                                                                      acaACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATAtg                                               >  1:318754/1‑131 (MQ=255)                                                                                                       caACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAataata                                    <  2:305603/141‑1 (MQ=255)                                                                                                            tGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCTCATAACTCAACGATTTTGATTGAGCGTATGTGATATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATaataaaata                               <  2:339518/141‑1 (MQ=255)                                                                                                              aaGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAaataat                             >  1:333329/1‑141 (MQ=255)                                                                                                                    aTAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTAGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCa                       >  1:369161/1‑141 (MQ=255)                                                                                                                      aaaCCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGa                     <  1:32829/141‑1 (MQ=255)                                                                                                                                    aaaTACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATaaaa       <  1:111766/141‑1 (MQ=255)                                                                                                                                         cAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGTCAATAATAAAATAATTAATCAGATAAATACTATAAAATAACt  >  2:69067/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                            AAAGAATATGAAAAATATGTTATCAGTGATGCCGTACACATCGGTTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACT  >  CP000730/932323‑932599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.