New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	932460 =	36 (0.950)	3 (0.090)	3/246	5.2	8.5%	intergenic (+6/+257)	dltD/nifU	D‑alanine transfer protein DltD/possible NifU family protein
	?	CP000730	932506 =	32 (0.920)					intergenic (+52/+211)	dltD/nifU	D‑alanine transfer protein DltD/possible NifU family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTA  >  CP000730/932367‑932638                                                                                                                                            |                                                                                                                                     ttGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTAttttt                                                                                                                                     <  2:364420/141‑1 (MQ=255)       aGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAttt                                                                                                                               <  1:248015/141‑1 (MQ=255)        ggTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAtttt                                                                                                                              >  2:32829/1‑141 (MQ=255)        ggTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAtttt                                                                                                                              >  2:162494/1‑141 (MQ=255)              gTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGATCTTTTTATATTTTAAAttt                                                                                                                        >  1:339518/1‑141 (MQ=255)                 tataTGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCat                                                                                                                     <  2:404159/141‑1 (MQ=255)                                   gCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAatat                                                                                                   >  1:315346/1‑141 (MQ=255)                                          atatGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTg                                                                                            <  1:213660/141‑1 (MQ=255)                                            atGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGa                                                                                          <  1:380217/141‑1 (MQ=255)                                               aaaGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGatat                                                                                       <  1:168548/141‑1 (MQ=255)                                                aaGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATAtg                                                                                      <  2:79181/141‑1 (MQ=255)                                                 aGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAGAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATAtgt                                                                                     <  2:281738/141‑1 (MQ=255)                                                 aGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAtttt                                                                                                                              >  2:318313/1‑100 (MQ=255)                                                 aGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATAtttt                                                                                                                              <  1:318313/100‑1 (MQ=255)                                                    tGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGc                                                                                  >  2:297971/1‑141 (MQ=255)                                                       aCCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCaat                                                                               >  1:386219/1‑141 (MQ=255)                                                       aCCACAACCTGAAGTAGATAAACCTAAAAATTAAAACACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCaat                                                                               >  2:64117/1‑141 (MQ=255)                                                          acaACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATAtg                                                                                      >  1:318754/1‑131 (MQ=255)                                                          acaACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATAtg                                                                                      <  2:318754/131‑1 (MQ=255)                                                           caACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAataata                                                                           <  2:305603/141‑1 (MQ=255)                                                                tGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCTCATAACTCAACGATTTTGATTGAGCGTATGTGATATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATaataaaata                                                                      <  2:339518/141‑1 (MQ=255)                                                                  aaGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAaataat                                                                    >  1:333329/1‑141 (MQ=255)                                                                        aTAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTAGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCa                                                              >  1:369161/1‑141 (MQ=255)                                                                          aaaCCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGa                                                            <  1:32829/141‑1 (MQ=255)                                                                                        aaaTACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATaaaa                                              <  1:111766/141‑1 (MQ=255)                                                                                             cAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGTCAATAATAAAATAATTAATCAGATAAATACTATAAAATAACt                                         >  2:69067/1‑141 (MQ=255)                                                                                                       aTAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAg                               >  1:295563/1‑141 (MQ=255)                                                                                                              aaCGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAAtt                        >  2:268003/1‑141 (MQ=255)                                                                                                                     ttgattgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGc                 <  1:287541/141‑1 (MQ=255)                                                                                                                     ttgattgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGc                 >  1:240103/1‑141 (MQ=255)                                                                                                                       gattgaGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGa               <  1:126182/141‑1 (MQ=255)                                                                                                                       gattgaGCGTATGCGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGa               >  1:227627/1‑141 (MQ=255)                                                                                                                                    tgCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCCTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGAGAAAAAAGACAGGta  >  2:99198/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                     TTGGAAAGGTTGGGTTTATATGGATGAGCAAATTGCGAAACATATGAAAGGTGAACCACAACCTGAAGTAGATAAACCTAAAAATTAAAATACAAATAGCACATAACTCAACGATTTTGATTGAGCGTATGTGCTATTTTTATATTTTAAATTTCATAGAATAGAATAGTAATATGTGCTTGGATATGTGGCAATAATAAAATAATTAATCAGATAAATAGTATAAAATAACTTTCCCATCAGTCCAATTTGACAGCGAAAAAAGACAGGTA  >  CP000730/932367‑932638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.