| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2670076 | 101 (1.020) | 3 (0.030) | 3/234 | NT | 3.0% | intergenic (+13/+69) | yicL/USA300HOU_2525 | DMT superfamily drug/metabolite transporter/esterase |
| ? | CP000730 | = 2670127 | 101 (1.120) | intergenic (+64/+18) | yicL/USA300HOU_2525 | DMT superfamily drug/metabolite transporter/esterase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCTGTCGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2669925‑2670076‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaactctgataTCACCTATAAGGTAACTACGTTGTTAAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGCCTACG < CP000730/2670127‑2669988 ACCTGTCGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGA < 2:849272/141‑1ACCTGTCGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGA < 2:270229/141‑1 GTCGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAAC < 2:640765/141‑1 TCGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACT > 1:72700/1‑141 TCGTAGCCGTTATCGCAAGCAGTCTATGGTTAAATGTGGCATTCAAACCATTTCAAATCGTAGGCAGCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATAAGATGAATAAGAAAACT > 1:407595/1‑141 CGTAGCTGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTC < 2:106625/141‑1 CGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTC < 2:151941/141‑1 CGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAAGCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTC < 1:294389/141‑1 GTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCT > 1:577813/1‑141 TAGCCGTTATCGCAAGCAGTCTATGGTTACATGTTGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTG < 2:990903/141‑1 TAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTG > 1:175969/1‑141 TAGCCGTTATCGCAAGCAGTCTATGGGTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTG < 2:909557/141‑1 AGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATGCAAACCATTTCAAATCGTAGGCATCATTCGTATTATGATGATAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGA > 1:174958/1‑141 GCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGAT > 2:214549/1‑141 GCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGAT > 2:64718/1‑141 caaatgtatcgAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATA < 2:885365/130‑1 CCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATA > 2:182049/1‑141 CCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATA > 2:654/1‑141 CCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATA < 1:377853/141‑1 CCGTTAGCGCAATCAGTCTATTGTTACATGCTGCATTCAAACCATTTCAAATCTTATGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATA < 1:1133889/141‑1 TAGGCATCATTCTTAGTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATATCACCTATAAGGTAACTACGTTGTTAAATAATAGTTACTTGCTAAAGTGATTAT < 1:811520/141‑1 CATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATATCACCTATAAGGTAACTACGTTGTTAAATAATAGTTACTTGCTAAAGTGATTATCAGAGTT < 2:259606/141‑1 TTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATATCACCTATAAGGTAACTACGTTGTTAAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTT < 2:812597/141‑1 AAACTCTGATATCACCTATAAGGTCACTACGTTGTTAAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTTATCTAATGTTTCAGGTTGTCATTTAAGTGATAGTAATAAAATTAAAATCATAATTAGAAT > 2:1004866/1‑141 AAACTCTGATATCACCTATAAGGTAACTACGTTGTTAAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAAT > 1:802409/1‑141 CTGATATCACCTATAAGGTAACTACGTTGTTAAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGC > 2:763270/1‑141 TGATATCACCTATAAGGTAACTACGTTGTTAAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGCC > 1:558564/1‑141 ATATCACCTATAAGGTAACTACGTTGTTAAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGCCTA < 2:526648/141‑1 ATATCACCTATAAGGTAACTACGTTGTTAAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAA < 1:301743/119‑1 ATATCACCTATAAGGTAACTACGTTGTTAAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAA > 2:301743/1‑119 TATCACCTATAAGGTAACTACGTTGTTAAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGCCTAC < 2:923715/141‑1 ATCACCTATAAGGTAACTACGTTGTTAAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTTATAGTAATAAAATTAAAATCATAATAAGAATGATGCCTACG > 1:698160/1‑141 ACCTGTCGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2669925‑2670076‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaactctgataTCACCTATAAGGTAACTACGTTGTTAAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGCCTACG < CP000730/2670127‑2669988 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |