| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 441295 = | 37 (0.890) | 3 (0.080) | 5/240 | NT | 8.9% | intergenic (+12/+101) | guaA/USA300HOU_0415 | GMP synthase (glutamine‑hydrolyzing)/hypothetical protein |
| ? | CP000730 | 441323 = | 27 (0.700) | intergenic (+40/+73) | guaA/USA300HOU_0415 | GMP synthase (glutamine‑hydrolyzing)/hypothetical protein | |||||
CAATATGAAATTTTATATAAAAATAAACACGGAAAATTGCCTTATTGATGAATTAAAACGCAAACTTAGAACACCTTACCCCTTTTCCGTCCTTATTGTAATTTTCCAACTACTCAAATTAAAAACCACCCGTGCAAACAGGTGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/441443‑441295‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGATCTTCTTGTT > CP000730/441323‑441460 CAATATGAAATTTTATATAAAAATAAACACGGAAAATTGCCTTATTGATGAATTAAAACGCAAACTTAGAACACCTTACCCCTTTTCCGTCCTTATTGTAATTTTCCAACTACTCGAATTAAAAACCACCCGTGCAAACAG < 1:423198/141‑1 CAAACTTAGAACACCTTACCCCTTTTCCGTCCTTATTGTAATTTTCCAACTACTCAAATTAAAAACCACCTGTTTGCACGGGTGGTTTTTAATT < 1:109496/94‑1 CAAACTTAGAACACCTTACCCCTTTTCCGTCCTTATTGTAATTTTCCAACTACTCAAATTAAAAACCACCTGTTTGCACGGGTGGTTTTTAATT > 2:109496/1‑94 TAAAAACCACCCGTGCAAACAGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAA > 1:260079/1‑141 AAAACCACCCGTGCAAACAGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATGAAATT > 1:25909/1‑141 CACCCGTGCAAACAGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATA > 1:493229/1‑141 ggaTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGATCT < 1:430852/138‑1 gttGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGATCTTC < 2:239767/138‑1 GTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGATCTTC < 2:240098/141‑1 GTGGTTGTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGATCTTC < 2:397867/141‑1 TTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGATCTTCTTGT > 2:242449/1‑141 TTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGATCTTCTTGTT < 1:358336/141‑1 CAATATGAAATTTTATATAAAAATAAACACGGAAAATTGCCTTATTGATGAATTAAAACGCAAACTTAGAACACCTTACCCCTTTTCCGTCCTTATTGTAATTTTCCAACTACTCAAATTAAAAACCACCCGTGCAAACAGGTGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/441443‑441295‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGATCTTCTTGTT > CP000730/441323‑441460 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |