New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	441295 =	37 (0.890)	3 (0.080)	5/240	NT	8.9%	intergenic (+12/+101)	guaA/USA300HOU_0415	GMP synthase (glutamine‑hydrolyzing)/hypothetical protein
	?	CP000730	441323 =	27 (0.700)					intergenic (+40/+73)	guaA/USA300HOU_0415	GMP synthase (glutamine‑hydrolyzing)/hypothetical protein

ACAAAAGATTTCTAGTCGTATCGTAAACGAAGTAGATCACGTCAACCGCGTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGATCTTCTTGTT  >  CP000730/441184‑441460                                                                                                                                            |                                                                                                                                          ttttatataaaaataaacacggaaaattgccttattgatgaattaaaacgcaaacttagaacaccttaccccttttccgtccttattgtaattttccaactactcaaattaAAAACCACCTGTTTGCACGGGTGGTTTTTa                                                                                                                                          >  1:260079‑M1/112‑141 (MQ=255) aCAAAAGATTTCTAGTCGTATCGTAAACGAAGTAGATCACGTCAACCGCGTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGCGGGGAAATATTTATATATAATAAAACAACCTGTGTGCACGGGTGGTTTTTa                                                                                                                                          >  1:397867/1‑141 (MQ=255)  cAAAAGATTTCTAGTCGTATCGTAAACGAAGTAGATCACGTCAACCGCGTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTaa                                                                                                                                         <  2:123737/141‑1 (MQ=255)       gATTTCTAGTCGTATCGTAAACGAAGTAGATCACGTCAACCGCGTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGa                                                                                                                                    <  2:44125/141‑1 (MQ=255)                 cgtatcgtaAACGAAGTAGATCACGTCAACCGCGTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGaa                                                                                                                          <  1:301489/141‑1 (MQ=255)                                   gATCACGTCAACCGCGTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGa                                                                                                        >  2:358336/1‑141 (MQ=255)                                          tCAACCGCGTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAgggg                                                                                                 <  1:334722/141‑1 (MQ=255)                                            aaCCGCGTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTa                                                                                               >  2:428448/1‑141 (MQ=255)                                            aaCCGCGTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTa                                                                                               >  1:82748/1‑141 (MQ=255)                                             aCCGCGTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTaa                                                                                              >  1:478043/1‑141 (MQ=255)                                               cgcgTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAgg                                                                                            <  1:288416/141‑1 (MQ=255)                                                  gTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGgtgt                                                                                         <  1:52960/141‑1 (MQ=255)                                                   caaacttagaacaccttaccccttttccgtccttattgtaattttccaactactcaaattaaaaaccacctgtttgcacgggtggttttTAAtt                                                                                                                                       >  2:109496‑M2/90‑94 (MQ=255)                                                   caaacttagaacaccttaccccttttccgtccttattgtaattttccaactactcaaattaaaaaccacctgtttgcacgggtggttttTAAtt                                                                                                                                       <  1:109496‑M2/5‑1 (MQ=255)                                                              aTTACATCAAAACCACCAAGCACAATGGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCg                                                                             <  2:69186/141‑1 (MQ=255)                                                                 aCATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGttt                                                                          >  1:331357/1‑141 (MQ=255)                                                                 aCATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATACAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGttt                                                                          <  2:470195/141‑1 (MQ=255)                                                                      aaaaCCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAAtt                                                                     >  2:320001/1‑141 (MQ=255)                                                                             ccaAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAAt                                                              >  1:390627/1‑141 (MQ=255)                                                                             ccaAGCACAATTGAGAGGGAATAATTCTATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAAt                                                              >  2:493048/1‑141 (MQ=255)                                                                              caAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATa                                                             >  1:431347/1‑141 (MQ=255)                                                                                    caATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCaa                                                       >  1:388363/1‑141 (MQ=255)                                                                                       ttGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAAttt                                                    <  1:400780/141‑1 (MQ=255)                                                                                             gggAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCgtg                                              >  2:263634/1‑141 (MQ=255)                                                                                                aataatTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGttt                                           >  1:449387/1‑141 (MQ=255)                                                                                                  taatTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTAt                                         >  1:290227/1‑141 (MQ=255)                                                                                                     ttATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGGAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTAtttc                                      >  1:174690/1‑140 (MQ=255)                                                                                                        tatataATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTtat                                   >  1:75550/1‑141 (MQ=255)                                                                                                           aattaAAAACCACCCGTGCAAACAGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTg                                                                               <  1:109496‑M1/89‑1 (MQ=255)                                                                                                           aattaAAAACCACCCGTGCAAACAGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTg                                                                               >  2:109496‑M1/6‑94 (MQ=255)                                                                                                             aataaAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATaaa                              <  1:296205/141‑1 (MQ=255)                                                                                                              taaaaaccacccgtgcaaacaggtggttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATaaaa                             >  1:260079‑M2/31‑141 (MQ=255)                                                                                                                aaaaccacccgtgcaaacaggtggttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATGAAAtt                           >  1:25909‑M2/29‑141 (MQ=255)                                                                                                                     cacccgtgcaaacaggtggttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCata                      >  1:493229‑M2/24‑141 (MQ=255)                                                                                                                       ccTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTACGGTGTTCTAAGATTGAGATATCATTAACCAAAACGGAAATTCACACTGTTTAATTTTATATAAAGTTACATAtt                    >  1:100116/1‑141 (MQ=255)                                                                                                                        CTGTTTGCACGGGTGGTTTTTAATTCGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTg                   <  1:423198‑M1/141‑1 (MQ=255)                                                                                                                           tttGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGTACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCTTTTTAATTCATCAATAACGCATTTTTCCGTGTTTATTTTTATATAAAATTTCATATTGttt                <  2:463035/141‑1 (MQ=255)                                                                                                                             tGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAg              <  2:365583/141‑1 (MQ=255)                                                                                                                                  ggatggttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGAtct         <  1:430852‑M2/131‑1 (MQ=255)                                                                                                                                    gttgttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGAtcttc       <  2:239767‑M2/133‑1 (MQ=255)                                                                                                                                    gtggttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGAtcttc       <  2:240098‑M2/133‑1 (MQ=255)                                                                                                                                    gtggttgtTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGAtcttc       <  2:397867‑M2/133‑1 (MQ=255)                                                                                                                                        ttttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGATCTTCTTGt   >  2:242449‑M2/5‑141 (MQ=255)                                                                                                                                         tttTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGATCTTCTTGtt  <  1:358336‑M2/138‑1 (MQ=255)                                                                                                                                            |                                                                                                                                          ACAAAAGATTTCTAGTCGTATCGTAAACGAAGTAGATCACGTCAACCGCGTAGTCTATGACATTACATCAAAACCACCAAGCACAATTGAGTGGGAATAATTATATATAATAAAACCACCTGTTTGCACGGGTGGTTTTTAATTTGAGTAGTTGGAAAATTACAATAAGGACGGAAAAGGGGTAAGGTGTTCTAAGTTTGCGTTTTAATTCATCAATAAGGCAATTTTCCGTGTTTATTTTTATATAAAATTTCATATTGTTTAGGATCTTCTTGTT  >  CP000730/441184‑441460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.