New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1234260 =	47 (1.130)	3 (0.080)	3/240	NT	6.7%	intergenic (+170/‑58)	prkC/engC	non‑specific serine/threonine protein kinase/possible GTP‑binding protein EngC
	?	CP000730	1234304 =	40 (1.030)					intergenic (+214/‑14)	prkC/engC	non‑specific serine/threonine protein kinase/possible GTP‑binding protein EngC

ATCCTCGTGGTTTTGTATTGAAACGTTCGCCATTAACGTCTACTTGATATACCCCACTAATTGATTTCACTATTCGACCTGTCTTCAAAATGGCACCTCTCGATTAATTTTACTGCATTTATTATATCAAAGACTGGAAAATTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1234405‑1234260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaattaatCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAGGATTATTTAGAAAGAAAAAATTTTCACCGGTAGTTGGT  >  CP000730/1234304‑1234440                                                                                                                                                                                                                                                                                             ATCCTCGTGGTTTTGTATTGAAACGTTCGCCATTAAAGTCTACTTGATATAACCAAATAATCTATTTCACTATTCGACCTGTCTTCAAAATGGCACCTTTCGATTAATTTTTCTGTATTTATTATATCTAAGACTGGCAAA                                                                                                                                                >  2:127074/1‑141   CCTCGTGGTTTTGTATTGAAACGTTCGCCATTAACGTCTACTTGATATACCCCACTAATTGATTTCACTATTCGACCTGTCTTCAAAATGGCACCTCTCGATTAATTTTACTGCATTTATTATATCAAAGACTGGAAAATT                                                                                                                                              >  1:133384/1‑141   CCTCGTGGTTTTGTATTGAAACGTTCGCCATTAACGTCTACTTGATATACCCCACTAATTGATTTCACTATTCGACCTGTCTTCAAAATGGCACCTCTCGATTAATTTTACTGCATTTATTATATCAAAGACTGGAAAATT                                                                                                                                              >  2:273158/1‑141    CTCGTGGTTTTGTATTGAAACGTTCGCCATTAACGTCTACTTGATATACCCCACTAATTGATTTCACTATTCGACCTGTCTTCAAAATGGCACCTCTCGATTAATTTTACTGCATTTATTATATCAAAGACTGGAAAATTA                                                                                                                                             >  2:389406/1‑141      CGTGGTTTTGTATTGAAACGTTCGCCATTAACGTCTACTTGATATACCCCACTAATTGATTTCACTATTCGACCTGTCTTCAAAATGGCACCTCTCGATTAATTTTACTGCATTTATTATATCAAAGACTGGAAAATTAAT                                                                                                                                           >  1:120600/1‑141                                                                                                          AATTTTACTGCATTTATTATATCAAAGACTGGAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAGG                                       >  1:372218/1‑141                                                                                                               TACTGCATTTATTATATCAAAGACTGGAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAG                                                                            <  1:297620/99‑1                                                                                                               TACTGCATTTATTATATCAAAGACTGGAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAG                                                                            >  2:297620/1‑99                                                                                                                                               TAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAGGATTATTTAGAAAGAAAAAATTTTCACCGGTAGTTGGT  <  1:282537/141‑1                                                                                                                                                                                                                                                                                             ATCCTCGTGGTTTTGTATTGAAACGTTCGCCATTAACGTCTACTTGATATACCCCACTAATTGATTTCACTATTCGACCTGTCTTCAAAATGGCACCTCTCGATTAATTTTACTGCATTTATTATATCAAAGACTGGAAAATTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1234405‑1234260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaattaatCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAGGATTATTTAGAAAGAAAAAATTTTCACCGGTAGTTGGT  >  CP000730/1234304‑1234440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.