New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1234260 =	47 (1.130)	3 (0.080)	3/240	NT	6.7%	intergenic (+170/‑58)	prkC/engC	non‑specific serine/threonine protein kinase/possible GTP‑binding protein EngC
	?	CP000730	1234304 =	40 (1.030)					intergenic (+214/‑14)	prkC/engC	non‑specific serine/threonine protein kinase/possible GTP‑binding protein EngC

TTTGGAAGTCTCGGTATTTTTATGTTGAGATTGCGGTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACG  >  CP000730/1234123‑1234400                                                                                                                                          |                                                                                                                                             accaactaccggtgaaaattttttctttctaaataatcctcgtggttttgtattgaaacgttcgccattaacgtctacttgatataccccactaattgatttcactattcgacctgtcttcaaaatggcacctctcgATTa                                                                                                                                           <  1:282537‑M1/4‑1 (MQ=255)        gTCTCGGTATTTTTATGTTGAGATTGCGGTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTcc                                                                                                                                    <  2:40002/141‑1 (MQ=255)                   tttATGTTGAGATTGCGGTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGata                                                                                                                         <  2:479747/141‑1 (MQ=255)                   tttATGTTGAGATTGCGGTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGata                                                                                                                         <  2:313750/141‑1 (MQ=255)                   tttATGATGAGATTGCGGTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGAATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGata                                                                                                                         <  2:146082/141‑1 (MQ=255)                    ttATGTTGAGATTGCGGTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGatat                                                                                                                        >  2:471550/1‑141 (MQ=255)                    ttATGTTGAGATTGCGGTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGatat                                                                                                                        <  2:387404/141‑1 (MQ=255)                    ttATGTTGAGATTGCGGTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGatat                                                                                                                        >  2:274723/1‑141 (MQ=255)                     tATGTTGAGATTGCGGTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGAtata                                                                                                                       <  2:166121/141‑1 (MQ=255)                           gagaTTGCGGTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAAt                                                                                                                 <  1:123226/141‑1 (MQ=255)                           gagaTTGCGGTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAAt                                                                                                                 <  1:324571/141‑1 (MQ=255)                             gaTTGCGGTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGc                                                                                                               >  2:340606/1‑141 (MQ=255)                                 gCGGTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTa                                                                                                           >  2:252757/1‑141 (MQ=255)                                  cGGTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTaa                                                                                                          >  1:194526/1‑141 (MQ=255)                                    gTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCCCAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAATATTTTATATAATAAATATAGTaaaa                                                                                                        >  2:460473/1‑141 (MQ=255)                                      cctcgtggttttgtattgaaacgttcgccattaacgtctacttgatataccccactaattgatttcactattcgacctgtcttcaaaatggcacctctcgATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAAtt                                                                                                      >  1:372218‑M1/101‑141 (MQ=255)                                        ttttAAAATGCTTCATGTCATCATATACACGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTaa                                                                                                    <  2:26322/141‑1 (MQ=255)                                          ttAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATc                                                                                                  >  1:104812/1‑141 (MQ=255)                                               aTGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGagag                                                                                             <  1:37647/141‑1 (MQ=255)                                                tGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAgg                                                                                            <  1:40460/141‑1 (MQ=255)                                                tGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAgg                                                                                            <  2:6744/141‑1 (MQ=255)                                                  cTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTg                                                                                          >  1:68710/1‑141 (MQ=255)                                                   ttCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGc                                                                                         <  1:287224/141‑1 (MQ=255)                                                   ttCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGc                                                                                         >  1:398963/1‑141 (MQ=255)                                                   ttCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGc                                                                                         <  1:452187/141‑1 (MQ=255)                                                        gTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCAttt                                                                                    <  2:193261/141‑1 (MQ=255)                                                            tcatATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGaa                                                                                >  1:201669/1‑141 (MQ=255)                                                                    aGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTc                                                                        >  1:51122/1‑141 (MQ=255)                                                                     ggTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCg                                                                       <  1:460473/141‑1 (MQ=255)                                                                           ctacttgatataccccactaattgatttcactattcgacctgtcttcaaaatggcacctctcgATTAATTTTCCAGTCTTTGATATAATAAATGCAGTa                                                                                                           >  2:297620‑M1/64‑99 (MQ=255)                                                                           ctacttgatataccccactaattgatttcactattcgacctgtcttcaaaatggcacctctcgATTAATTTTCCAGTCTTTGATATAATAAATGCAGTa                                                                                                           <  1:297620‑M1/36‑1 (MQ=255)                                                                               gTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAACTGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGTTGCCATTTTGAAGACAGGTCGAATAGTCaaa                                                             >  2:56242/1‑141 (MQ=255)                                                                               gTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGaaa                                                             <  2:461182/141‑1 (MQ=255)                                                                                  tATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCa                                                          <  2:233213/141‑1 (MQ=255)                                                                                      aaTTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTa                                                      >  1:468359/1‑141 (MQ=255)                                                                                          cTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTgg                                                  >  1:200611/1‑141 (MQ=255)                                                                                           tGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTggg                                                 <  2:77268/141‑1 (MQ=255)                                                                                           tGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTggg                                                 <  1:222579/141‑1 (MQ=255)                                                                                           tGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTggg                                                 <  1:413744/141‑1 (MQ=255)                                                                                            gTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTgggg                                                <  2:152586/141‑1 (MQ=255)                                                                                            gTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTgggg                                                >  2:160796/1‑141 (MQ=255)                                                                                             tATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGt                                               >  2:70911/1‑141 (MQ=255)                                                                                                 aCTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTatat                                           <  2:279646/141‑1 (MQ=255)                                                                                                 aCTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTCTCCAGTCTTTGAGATAATAGATGCAGTAAAAATAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAGATCAAGTAGTGGCGTatat                                           <  2:279581/141‑1 (MQ=255)                                                                                                   tctcACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCa                                         <  2:194526/141‑1 (MQ=255)                                                                                                   tctcACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCa                                         <  1:215158/141‑1 (MQ=255)                                                                                                      cacaGTATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGt                                      >  2:382996/1‑141 (MQ=255)                                                                                                         aaTATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGa                                   <  2:499953/141‑1 (MQ=255)                                                                                                         aaTATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGa                                   >  2:316254/1‑141 (MQ=255)                                                                                                                 ttaatatataaaTGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATg                           >  1:75362/10‑141 (MQ=255)                                                                                                                  atCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGTTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATgg                          <  1:147208/141‑1 (MQ=255)                                                                                                                                        atatTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCa    >  1:201832/1‑141 (MQ=255)                                                                                                                                          ATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACg  >  1:120600‑M1/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                             TTTGGAAGTCTCGGTATTTTTATGTTGAGATTGCGGTAGTTTTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACG  >  CP000730/1234123‑1234400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.