New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1234260 =	47 (1.130)	3 (0.080)	3/240	NT	6.7%	intergenic (+170/‑58)	prkC/engC	non‑specific serine/threonine protein kinase/possible GTP‑binding protein EngC
	?	CP000730	1234304 =	40 (1.030)					intergenic (+214/‑14)	prkC/engC	non‑specific serine/threonine protein kinase/possible GTP‑binding protein EngC

TTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAGGATTATTTAGAAAGAAAAAATTTTCACCGGTAGTTGGT  >  CP000730/1234164‑1234440                                                                                                                                             |                                                                                                                                         ttAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATc                                                                                                                                          >  1:104812/1‑141 (MQ=255)      aTGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGagag                                                                                                                                     <  1:37647/141‑1 (MQ=255)       tGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAgg                                                                                                                                    <  2:6744/141‑1 (MQ=255)       tGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAgg                                                                                                                                    <  1:40460/141‑1 (MQ=255)         cTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTg                                                                                                                                  >  1:68710/1‑141 (MQ=255)          ttCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGc                                                                                                                                 <  1:452187/141‑1 (MQ=255)          ttCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGc                                                                                                                                 >  1:398963/1‑141 (MQ=255)          ttCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGc                                                                                                                                 <  1:287224/141‑1 (MQ=255)               gTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCAttt                                                                                                                            <  2:193261/141‑1 (MQ=255)                   tcatATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGaa                                                                                                                        >  1:201669/1‑141 (MQ=255)                           aGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTc                                                                                                                >  1:51122/1‑141 (MQ=255)                            ggTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCg                                                                                                               <  1:460473/141‑1 (MQ=255)                                      gTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAACTGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGTTGCCATTTTGAAGACAGGTCGAATAGTCaaa                                                                                                     >  2:56242/1‑141 (MQ=255)                                      gTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGaaa                                                                                                     <  2:461182/141‑1 (MQ=255)                                         tATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCa                                                                                                  <  2:233213/141‑1 (MQ=255)                                             aaTTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTa                                                                                              >  1:468359/1‑141 (MQ=255)                                                 cTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTgg                                                                                          >  1:200611/1‑141 (MQ=255)                                                  tGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTggg                                                                                         <  2:77268/141‑1 (MQ=255)                                                  tGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTggg                                                                                         <  1:413744/141‑1 (MQ=255)                                                  tGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTggg                                                                                         <  1:222579/141‑1 (MQ=255)                                                   gTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTgggg                                                                                        <  2:152586/141‑1 (MQ=255)                                                   gTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTgggg                                                                                        >  2:160796/1‑141 (MQ=255)                                                    tATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGt                                                                                       >  2:70911/1‑141 (MQ=255)                                                        aCTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTatat                                                                                   <  2:279646/141‑1 (MQ=255)                                                        aCTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTCTCCAGTCTTTGAGATAATAGATGCAGTAAAAATAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAGATCAAGTAGTGGCGTatat                                                                                   <  2:279581/141‑1 (MQ=255)                                                          tctcACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCa                                                                                 <  1:215158/141‑1 (MQ=255)                                                          tctcACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCa                                                                                 <  2:194526/141‑1 (MQ=255)                                                             cacaGTATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGt                                                                              >  2:382996/1‑141 (MQ=255)                                                                aaTATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGa                                                                           <  2:499953/141‑1 (MQ=255)                                                                aaTATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGa                                                                           >  2:316254/1‑141 (MQ=255)                                                                        ttaatatataaaTGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATg                                                                   >  1:75362/10‑141 (MQ=255)                                                                         atCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGTTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATgg                                                                  <  1:147208/141‑1 (MQ=255)                                                                                               atatTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCa                                            >  1:201832/1‑141 (MQ=255)                                                                                                 ATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACg                                          >  1:120600‑M1/1‑141 (MQ=255)                                                                                                   TAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAg                                        >  2:389406‑M1/1‑141 (MQ=255)                                                                                                    aattttactgcatttattatatcaaagactggaaaattaatCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAgg                                       >  1:372218‑M2/42‑141 (MQ=255)                                                                                                    aagtttCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAgg                                       <  2:95943/138‑1 (MQ=255)                                                                                                    AATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAgg                                       >  2:273158‑M1/1‑141 (MQ=255)                                                                                                    AATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAgg                                       >  1:133384‑M1/1‑141 (MQ=255)                                                                                                      TTTGCCAGTCTTAGATATAATAAATACAGAAAAATTAATCGAAAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATAGATTATTTGGTTATATCAAGTAGACTTTAATGGCGAACGTTTCAATACAAAACCACGAGGat                                     >  2:127074‑M1/1‑141 (MQ=255)                                                                                                         tactgcatttattatatcaaagactggaaaattaatCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAg                                                                            >  2:297620‑M2/37‑99 (MQ=255)                                                                                                         tactgcatttattatatcaaagactggaaaattaatCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAg                                                                            <  1:297620‑M2/63‑1 (MQ=255)                                                                                                          ccAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAGGattatt                                 >  2:447846/1‑141 (MQ=255)                                                                                                             gTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAGGATTATTTag                              >  2:248846/1‑141 (MQ=255)                                                                                                               cTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAGGATTATTTagaa                            >  2:347321/1‑141 (MQ=255)                                                                                                                tttGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAGGATTATTTagaaa                           <  1:4838/141‑1 (MQ=255)                                                                                                                     tataATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAAAGCTTCACTAAAAAAACACGAGGATTATTTAGAAAGaaaa                      >  1:22177/1‑141 (MQ=255)                                                                                                                       taataaATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAGGATTATTTAGAAAGaaaaaa                    >  1:389590/1‑141 (MQ=255)                                                                                                                           aaaTGCAGTAAAATTAATCGAGAGGAGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAGGATGATTTAGAAAGAAAAAAtttt                >  1:457805/1‑141 (MQ=255)                                                                                                                               gCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCTATACAAAACCACGAGGATTATTTAGAAAGAAAAAATTTTCAcc            >  1:256265/1‑141 (MQ=255)                                                                                                                                 aGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAGGATTATTTAGAAAGAAAAAATTTTCACCgg          >  2:110415/1‑141 (MQ=255)                                                                                                                                         taatCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAGGATTATTTAGAAAGAAAAAATTTTCACCGGTAGTTGGt  <  1:282537‑M2/137‑1 (MQ=255)                                                                                                                                             |                                                                                                                                         TTAAAATGCTTCATGTCATCATATACAGGTGAGCATTGTCTATCAATTCTGTATCACTCTCACAATATTTATATCATTTGAAATGATCATTTATATATTAATTTTCCAGTCTTTGATATAATAAATGCAGTAAAATTAATCGAGAGGTGCCATTTTGAAGACAGGTCGAATAGTGAAATCAATTAGTGGGGTATATCAAGTAGACGTTAATGGCGAACGTTTCAATACAAAACCACGAGGATTATTTAGAAAGAAAAAATTTTCACCGGTAGTTGGT  >  CP000730/1234164‑1234440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.